Variant report

Variant	rs28752032
Chromosome Location	chr6:88417589-88417590
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12190021	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203759	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13211833	1.00[ASN][1000 genomes]
rs13219631	1.00[ASN][1000 genomes]
rs34080809	1.00[ASN][1000 genomes]
rs35326820	1.00[ASN][1000 genomes]
rs35440627	1.00[ASN][1000 genomes]
rs35607770	1.00[ASN][1000 genomes]
rs35965137	1.00[ASN][1000 genomes]
rs3763176	1.00[ASN][1000 genomes]
rs61432898	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417757	1.00[ASN][1000 genomes]
rs62419465	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62419466	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758068	chr6:88358988-88441473	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2759454	chr6:88358988-88441473	Strong transcription Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88412800-88432600	Weak transcription	Brain Angular Gyrus	brain
2	chr6:88413000-88421600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:88413200-88424200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:88415400-88417600	Enhancers	GM12878-XiMat	blood
5	chr6:88415400-88419800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:88416400-88417600	Enhancers	NHDF-Ad	bronchial
7	chr6:88417000-88418800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:88417200-88418000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:88417200-88419800	Weak transcription	K562	blood
10	chr6:88417200-88423400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:88417200-88424000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:88417400-88418000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:88417400-88418200	Weak transcription	Osteobl	bone
14	chr6:88417400-88421800	Weak transcription	A549	lung
15	chr6:88417400-88424000	Weak transcription	HSMM	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links