Variant report

Variant	rs34080809
Chromosome Location	chr6:88415654-88415655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:88415419..88418408-chr6:88419849..88421936,2	K562	blood:
2	chr6:88414869..88417780-chr6:88431598..88434041,2	K562	blood:
3	chr6:88413588..88415968-chr6:88418558..88420511,2	MCF-7	breast:
4	chr6:88415578..88418396-chr6:88423147..88424989,2	K562	blood:
5	chr6:88415099..88417482-chr6:88428698..88430339,2	MCF-7	breast:
6	chr6:88409819..88412210-chr6:88413851..88416889,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135334	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12190021	1.00[ASN][1000 genomes]
rs12203759	1.00[ASN][1000 genomes]
rs13193470	0.81[EUR][1000 genomes]
rs13203957	0.81[EUR][1000 genomes]
rs13211833	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219631	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2307383	0.81[EUR][1000 genomes]
rs2307393	0.81[EUR][1000 genomes]
rs28381518	0.81[EUR][1000 genomes]
rs28381552	0.81[EUR][1000 genomes]
rs28752032	1.00[ASN][1000 genomes]
rs34423353	0.81[EUR][1000 genomes]
rs35145047	0.81[EUR][1000 genomes]
rs35324020	0.81[EUR][1000 genomes]
rs35326820	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35440627	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35494431	0.81[EUR][1000 genomes]
rs35607770	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35917348	0.81[EUR][1000 genomes]
rs35946241	0.81[EUR][1000 genomes]
rs35965137	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36090981	0.81[EUR][1000 genomes]
rs3763176	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57526195	0.81[EUR][1000 genomes]
rs60313720	0.81[EUR][1000 genomes]
rs61432898	1.00[ASN][1000 genomes]
rs62417727	0.81[EUR][1000 genomes]
rs62417757	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62419465	0.89[ASN][1000 genomes]
rs62419466	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758068	chr6:88358988-88441473	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2759454	chr6:88358988-88441473	Strong transcription Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88412800-88432600	Weak transcription	Brain Angular Gyrus	brain
2	chr6:88413000-88415800	Weak transcription	NHDF-Ad	bronchial
3	chr6:88413000-88416000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:88413000-88416600	Weak transcription	Fetal Heart	heart
5	chr6:88413000-88416600	Weak transcription	HMEC	breast
6	chr6:88413000-88416800	Weak transcription	HSMM	muscle
7	chr6:88413000-88421600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:88413200-88416400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:88413200-88416600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:88413200-88416600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:88413200-88416600	Weak transcription	Hela-S3	cervix
12	chr6:88413200-88424200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:88413400-88416000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr6:88414200-88417200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:88414800-88416200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:88415000-88416200	Enhancers	NHLF	lung
17	chr6:88415000-88417400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:88415400-88415800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:88415400-88416600	Weak transcription	NH-A	brain
20	chr6:88415400-88416800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:88415400-88417200	Enhancers	K562	blood
22	chr6:88415400-88417600	Enhancers	GM12878-XiMat	blood
23	chr6:88415400-88419800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:88415600-88416000	Weak transcription	Osteobl	bone
25	chr6:88415600-88416400	Enhancers	A549	lung

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