Variant report

Variant	rs28381552
Chromosome Location	chr6:88377049-88377050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:88361852..88364421-chr6:88375855..88377969,2	MCF-7	breast:
2	chr6:88373813..88376185-chr6:88376280..88379564,3	K562	blood:
3	chr6:88368493..88371498-chr6:88375456..88378461,3	K562	blood:

Extended variants
information (count: 210 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:205)

rs_ID	r²[population]
rs10080513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11962998	1.00[ASN][1000 genomes]
rs12190021	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs12203759	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs13192889	0.89[ASN][1000 genomes]
rs13193193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13193303	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193703	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193911	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193927	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196538	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196755	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13197090	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13198094	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13198372	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13202825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203649	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204592	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204861	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13206240	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206485	1.00[ASN][1000 genomes]
rs13206536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206957	1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208201	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208550	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208933	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13210643	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13211439	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13211833	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13211892	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13212076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13212089	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13213285	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13213812	1.00[ASN][1000 genomes]
rs13215013	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13215887	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13216482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13216724	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13216727	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219631	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs16879475	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879517	1.00[ASN][1000 genomes]
rs16879528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17454834	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17455002	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17504209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17504475	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17504517	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2273130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2273131	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2307383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2307389	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2307393	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28360511	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28381452	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28381487	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28381518	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28385570	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28385591	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28385632	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34006571	1.00[ASN][1000 genomes]
rs34007246	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34008333	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34054042	1.00[ASN][1000 genomes]
rs34054261	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34080809	0.81[EUR][1000 genomes]
rs34107692	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34154420	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34220026	1.00[ASN][1000 genomes]
rs34369446	1.00[ASN][1000 genomes]
rs34385811	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34395299	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34423353	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34455158	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34540725	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34547532	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34650015	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34727395	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34926624	1.00[ASN][1000 genomes]
rs34934063	0.89[ASN][1000 genomes]
rs34941612	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35031351	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35056836	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35058527	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35116392	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35145047	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35234062	1.00[ASN][1000 genomes]
rs35237504	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35289945	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35303040	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35317752	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35324020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35326820	0.87[EUR][1000 genomes]
rs35350424	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35363104	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35396056	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35440627	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35465301	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35494431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35504787	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35593940	0.81[EUR][1000 genomes]
rs35607770	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35610797	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35679038	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35688969	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35866706	1.00[AFR][1000 genomes]
rs35903880	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35917348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35925514	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35946241	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35965137	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35972482	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36020402	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36041712	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36090981	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757369	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757371	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs3800551	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];1.00[ASN][1000 genomes]
rs3823469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4409162	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4587137	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55686846	1.00[AFR][1000 genomes]
rs55751639	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55759644	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55765303	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55766457	1.00[ASN][1000 genomes]
rs55880748	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55960393	0.89[ASN][1000 genomes]
rs56004408	1.00[ASN][1000 genomes]
rs56031077	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57526195	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59361639	1.00[ASN][1000 genomes]
rs60313720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61432898	1.00[AFR][1000 genomes]
rs62417663	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417666	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417673	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417674	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417675	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417676	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417680	1.00[ASN][1000 genomes]
rs62417686	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417689	1.00[ASN][1000 genomes]
rs62417692	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417693	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417698	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62417699	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417700	1.00[AFR][1000 genomes]
rs62417701	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417715	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417718	1.00[ASN][1000 genomes]
rs62417720	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417727	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417757	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62419377	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62419378	1.00[ASN][1000 genomes]
rs62419386	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905345	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6905480	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911442	1.00[ASN][1000 genomes]
rs6911548	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6926321	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929542	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940675	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71548716	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739772	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740476	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741170	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742607	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744190	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744213	1.00[CHB][hapmap]
rs7749032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750528	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750775	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750877	1.00[ASN][1000 genomes]
rs7754550	1.00[ASN][1000 genomes]
rs7757446	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759422	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759648	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7760919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771832	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9444507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9450703	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9450714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031460	chr6:88153079-88410050	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv1026482	chr6:88164934-88409728	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1027706	chr6:88168987-88409728	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	esv2758068	chr6:88358988-88441473	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	esv2759454	chr6:88358988-88441473	Strong transcription Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Obesity-related traits	23251661	GWAS catalog

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88300600-88391200	Weak transcription	Colonic Mucosa	Colon
2	chr6:88301200-88385000	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:88305000-88398800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:88312400-88380600	Weak transcription	Brain Substantia Nigra	brain
5	chr6:88314000-88384800	Weak transcription	Hela-S3	cervix
6	chr6:88314200-88399200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:88314600-88385000	Weak transcription	Esophagus	oesophagus
8	chr6:88316600-88381200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:88316600-88390000	Weak transcription	Pancreas	Pancrea
10	chr6:88320400-88400800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:88322800-88382000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:88324000-88385000	Weak transcription	Gastric	stomach
13	chr6:88324200-88378200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:88324200-88380400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr6:88329800-88383200	Weak transcription	Lung	lung
16	chr6:88333400-88384800	Weak transcription	Brain Angular Gyrus	brain
17	chr6:88339200-88396800	Weak transcription	Right Ventricle	heart
18	chr6:88344400-88384800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:88347800-88378000	Weak transcription	Fetal Brain Female	brain
20	chr6:88348000-88385000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:88348600-88377600	Weak transcription	Brain Anterior Caudate	brain
22	chr6:88349200-88381400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:88349400-88377800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr6:88349400-88385000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:88349400-88397400	Weak transcription	Ovary	ovary
26	chr6:88355200-88379400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:88356600-88380400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:88358200-88392000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:88359800-88381000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr6:88361000-88380400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:88363000-88408200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:88363200-88395000	Weak transcription	Stomach Mucosa	stomach
33	chr6:88364400-88384800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr6:88365000-88390000	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:88365400-88379800	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr6:88366400-88390000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr6:88366600-88390000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:88367000-88377400	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:88367600-88380400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr6:88367800-88380200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:88367800-88380200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr6:88367800-88380200	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr6:88367800-88385000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr6:88368000-88380200	Weak transcription	Fetal Intestine Large	intestine
45	chr6:88368000-88382000	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr6:88368000-88393400	Weak transcription	Small Intestine	intestine
47	chr6:88368600-88377600	Weak transcription	Placenta	Placenta
48	chr6:88368600-88379200	Weak transcription	Thymus	Thymus
49	chr6:88370200-88377200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:88370200-88378800	Weak transcription	Left Ventricle	heart

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