The 2.0 version of rSNPBase

Variant report

Variant rs55766457
Chromosome Location chr6:88220667-88220668
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:88183600-88226000 Weak transcription Gastric stomach
2 chr6:88183800-88221000 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr6:88183800-88221000 Weak transcription Fetal Kidney kidney
4 chr6:88183800-88225400 Weak transcription Aorta Aorta
5 chr6:88183800-88227400 Weak transcription Right Ventricle heart
6 chr6:88184000-88221000 Weak transcription Colon Smooth Muscle Colon
7 chr6:88184000-88224200 Weak transcription Hela-S3 cervix
8 chr6:88188600-88221600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
9 chr6:88191200-88227400 Weak transcription Spleen Spleen
10 chr6:88193600-88227600 Weak transcription Pancreas Pancrea
11 chr6:88193800-88221000 Weak transcription iPS-18 Cell Line embryonic stem cell
12 chr6:88193800-88221400 Weak transcription Ovary ovary
13 chr6:88193800-88227400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr6:88194000-88226200 Weak transcription Lung lung
15 chr6:88194000-88249000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
16 chr6:88194200-88221400 Weak transcription Colonic Mucosa Colon
17 chr6:88194600-88228200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr6:88198800-88223600 Weak transcription ES-I3 Cell Line embryonic stem cell
19 chr6:88200600-88227400 Weak transcription Small Intestine intestine
20 chr6:88205200-88224600 Weak transcription Stomach Mucosa stomach
21 chr6:88207200-88242600 Strong transcription Monocytes-CD14+_RO01746 blood
22 chr6:88210000-88223200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
23 chr6:88210200-88223600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr6:88210200-88224400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr6:88210200-88231400 Strong transcription Primary neutrophils fromperipheralblood blood
26 chr6:88210200-88232800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr6:88210200-88240600 Strong transcription Primary monocytes fromperipheralblood blood
28 chr6:88210400-88235000 Strong transcription Rectal Mucosa Donor 31 rectum
29 chr6:88210800-88224600 Strong transcription Primary T helper cells fromperipheralblood blood
30 chr6:88210800-88224600 Strong transcription Primary T regulatory cells fromperipheralblood blood
31 chr6:88210800-88230800 Strong transcription Breast Myoepithelial Primary Cells Breast
32 chr6:88210800-88230800 Strong transcription Fetal Thymus thymus
33 chr6:88210800-88231400 Strong transcription Osteobl bone
34 chr6:88210800-88235000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
35 chr6:88211000-88223000 Strong transcription Primary B cells from cord blood blood
36 chr6:88211000-88231400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr6:88211000-88235000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr6:88211000-88235200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr6:88211000-88241200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
40 chr6:88211200-88230800 Strong transcription Liver Liver
41 chr6:88211800-88224600 Strong transcription HUVEC blood vessel
42 chr6:88212000-88245200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr6:88212600-88221600 Weak transcription Rectal Smooth Muscle rectum
44 chr6:88212800-88224000 Weak transcription Placenta Amnion Placenta Amnion
45 chr6:88212800-88227400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
46 chr6:88213000-88221000 Weak transcription Primary T helper naive cells from peripheral blood blood
47 chr6:88213000-88224200 Weak transcription Brain Inferior Temporal Lobe brain
48 chr6:88213000-88224600 Weak transcription Primary T killer memory cells from peripheral blood blood
49 chr6:88213000-88225400 Weak transcription Brain Substantia Nigra brain
50 chr6:88213000-88226200 Weak transcription Brain Hippocampus Middle brain

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Last update: Aug 31, 2015