Variant report

Variant	rs9450703
Chromosome Location	chr6:88178413-88178414
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88177417..88179528-chr6:88181993..88183526,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164414	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10080513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11961492	0.90[YRI][hapmap]
rs11962998	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13193193	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13193470	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13200106	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13202825	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13203056	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13203790	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13205357	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13206485	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13206536	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13212076	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13213812	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13216482	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16879490	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16879507	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16879510	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16879528	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16879532	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17504209	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17504475	1.00[CEU][hapmap]
rs17504517	1.00[CEU][hapmap]
rs2246057	0.81[YRI][hapmap]
rs2273130	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2307393	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs28381552	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs34054042	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34369446	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35234062	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3734908	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs3800551	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3823469	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55766457	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55960393	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59361639	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62419372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62419373	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62419377	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62419378	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6900057	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6902069	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6917424	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6927654	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6927826	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6929542	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7738268	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7749032	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7760840	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7760919	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7770458	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9444507	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9444523	0.90[YRI][hapmap]
rs9450714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018155	chr6:88049729-88272862	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830722	chr6:88054186-88223625	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1031961	chr6:88110401-88367006	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1031460	chr6:88153079-88410050	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1026482	chr6:88164934-88409728	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv1027706	chr6:88168987-88409728	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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