Variant report

Variant	rs16879490
Chromosome Location	chr6:88227387-88227388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:88227076-88228000	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88226133..88227716-chr6:88228342..88231492,3	K562	blood:
2	chr6:88226102..88227716-chr6:88228342..88231492,4	K562	blood:

Variant related genes	Relation type
RARS2	TF binding region
ENSG00000146282	Chromatin interaction

Extended variants
information (count: 206 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:201)

rs_ID	r²[population]
rs10080513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11962998	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190021	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12203759	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13192889	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13193193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193303	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193703	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193911	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193927	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196538	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196755	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13197090	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13198094	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13198372	1.00[ASN][1000 genomes]
rs13200106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13202825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203649	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203957	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204592	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204861	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206240	1.00[ASN][1000 genomes]
rs13206485	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206957	1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208201	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208550	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208933	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13210643	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13211439	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13211833	0.81[EUR][1000 genomes]
rs13211892	1.00[ASN][1000 genomes]
rs13212076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13212089	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13213285	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13213812	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13215013	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13215887	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13216482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13216724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13216727	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs16879429	0.88[YRI][hapmap]
rs16879475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879517	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17455002	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17504209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17504475	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17504517	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2273130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2273131	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2307383	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2307389	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2307393	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28360511	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28381452	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28381487	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28381518	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28381552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28385570	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28385591	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28385632	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34006571	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34007246	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34008333	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34054042	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34054261	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34107692	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34154420	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34220026	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34369446	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34385811	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34395299	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34423353	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34455158	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34540725	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34547532	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34650015	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34727395	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34926624	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34934063	0.89[ASN][1000 genomes]
rs34941612	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35031351	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35056836	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35058527	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35116392	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35145047	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35234062	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35237504	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35289945	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35303040	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35317752	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35324020	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35326820	0.81[EUR][1000 genomes]
rs35350424	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35363104	0.93[EUR][1000 genomes]
rs35396056	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35440627	0.81[EUR][1000 genomes]
rs35465301	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35494431	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35504787	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35593940	1.00[EUR][1000 genomes]
rs35607770	0.81[EUR][1000 genomes]
rs35610797	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35679038	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35688969	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35866706	0.97[EUR][1000 genomes]
rs35903880	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35917348	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35925514	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35946241	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35965137	0.81[EUR][1000 genomes]
rs35972482	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36020402	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36041712	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36090981	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757369	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757371	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs3800551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3823469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4409162	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4587137	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55751639	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55759644	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55765303	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55766457	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55880748	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55960393	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56004408	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56031077	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57526195	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59361639	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60313720	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417663	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417666	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417673	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417674	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417675	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417676	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417680	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417686	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417689	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417692	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417693	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417698	0.83[EUR][1000 genomes]
rs62417699	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417701	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417715	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417718	1.00[ASN][1000 genomes]
rs62417720	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417727	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417753	1.00[ASN][1000 genomes]
rs62417757	0.81[EUR][1000 genomes]
rs62419373	0.82[AMR][1000 genomes]
rs62419377	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62419378	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62419386	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905345	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6905480	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911442	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911548	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926321	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929542	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940675	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71548716	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739772	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740476	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741170	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742607	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744190	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750528	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750775	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750877	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754550	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759422	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759648	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7760919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771832	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9444507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9450703	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9450714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018155	chr6:88049729-88272862	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031961	chr6:88110401-88367006	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1031460	chr6:88153079-88410050	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1026482	chr6:88164934-88409728	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1027706	chr6:88168987-88409728	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88183800-88227400	Weak transcription	Right Ventricle	heart
2	chr6:88191200-88227400	Weak transcription	Spleen	Spleen
3	chr6:88193600-88227600	Weak transcription	Pancreas	Pancrea
4	chr6:88193800-88227400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:88194000-88249000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:88194600-88228200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:88200600-88227400	Weak transcription	Small Intestine	intestine
8	chr6:88207200-88242600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr6:88210200-88231400	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:88210200-88232800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:88210200-88240600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr6:88210400-88235000	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr6:88210800-88230800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:88210800-88230800	Strong transcription	Fetal Thymus	thymus
15	chr6:88210800-88231400	Strong transcription	Osteobl	bone
16	chr6:88210800-88235000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:88211000-88231400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:88211000-88235000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:88211000-88235200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:88211000-88241200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:88211200-88230800	Strong transcription	Liver	Liver
22	chr6:88212000-88245200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:88212800-88227400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:88213400-88227400	Weak transcription	Esophagus	oesophagus
25	chr6:88214000-88231400	Strong transcription	NH-A	brain
26	chr6:88214200-88231400	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr6:88214200-88244400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr6:88214800-88235400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:88215000-88231400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr6:88215200-88235000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:88215200-88235000	Strong transcription	Duodenum Mucosa	Duodenum
32	chr6:88215800-88240800	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr6:88216200-88231800	Strong transcription	HSMM	muscle
34	chr6:88217400-88232800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:88217600-88230800	Strong transcription	GM12878-XiMat	blood
36	chr6:88217800-88231800	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr6:88217800-88295800	Weak transcription	Fetal Brain Male	brain
38	chr6:88218200-88235200	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr6:88218600-88230600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr6:88218600-88230800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:88218600-88231400	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr6:88218600-88231400	Strong transcription	Fetal Muscle Trunk	muscle
43	chr6:88218600-88231400	Strong transcription	Placenta	Placenta
44	chr6:88218600-88236200	Strong transcription	Fetal Intestine Large	intestine
45	chr6:88218800-88228800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr6:88218800-88230000	Strong transcription	Fetal Lung	lung
47	chr6:88218800-88230600	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr6:88218800-88230800	Strong transcription	Dnd41	blood
49	chr6:88218800-88231400	Strong transcription	Adipose Nuclei	Adipose
50	chr6:88219000-88229400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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