Variant report

Variant	rs34540725
Chromosome Location	chr6:88248448-88248449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88248391..88251882-chr6:88297586..88301251,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146282	Chromatin interaction
ENSG00000135336	Chromatin interaction

Extended variants
information (count: 200 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:195)

rs_ID	r²[population]
rs11962998	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13192889	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13193193	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193303	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193470	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193703	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193911	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193927	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196538	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196755	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13197090	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13198094	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13198372	1.00[ASN][1000 genomes]
rs13200106	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13202825	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203056	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203649	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203790	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203957	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204592	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204861	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205357	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206240	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13206485	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206536	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206957	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208201	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208550	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208933	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13210643	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13211439	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13211833	0.81[EUR][1000 genomes]
rs13211892	1.00[ASN][1000 genomes]
rs13212076	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13212089	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13213285	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13213812	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13215013	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13215887	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13216482	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13216724	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13216727	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219631	0.81[EUR][1000 genomes]
rs16879475	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879490	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879507	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879510	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879517	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879532	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17455002	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17504209	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17504475	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17504517	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2273130	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2273131	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2307383	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2307389	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2307393	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28360511	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28381452	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28381487	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28381518	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28381552	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28385570	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28385591	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28385632	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34006571	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34007246	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34008333	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34054042	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34054261	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34107692	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34154420	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34220026	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34369446	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34385811	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34395299	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34423353	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34455158	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34547532	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34650015	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34727395	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34926624	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34934063	0.89[ASN][1000 genomes]
rs34941612	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35031351	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35056836	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35058527	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35116392	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35145047	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35234062	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35237504	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35289945	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35303040	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35317752	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35324020	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35326820	0.81[EUR][1000 genomes]
rs35350424	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35363104	0.93[EUR][1000 genomes]
rs35396056	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35440627	0.81[EUR][1000 genomes]
rs35465301	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35494431	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35504787	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35593940	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35607770	0.81[EUR][1000 genomes]
rs35610797	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35679038	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35688969	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35866706	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35903880	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35917348	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35925514	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35946241	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35965137	0.81[EUR][1000 genomes]
rs35972482	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36020402	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36041712	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36090981	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734908	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757369	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757371	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763176	0.81[EUR][1000 genomes]
rs3800551	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3823469	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4409162	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4587137	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55751639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55759644	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55765303	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55766457	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55880748	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55960393	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56004408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56031077	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57526195	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59361639	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60313720	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417663	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417666	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417673	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417674	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417675	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417676	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417680	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417686	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417689	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417692	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417693	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417698	0.83[EUR][1000 genomes]
rs62417699	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417701	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417715	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417718	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62417720	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417727	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417753	1.00[ASN][1000 genomes]
rs62417757	0.81[EUR][1000 genomes]
rs62419377	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62419378	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62419386	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900057	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902069	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905345	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6905480	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911442	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911548	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911680	0.81[AFR][1000 genomes]
rs6917424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926321	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927654	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927826	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929542	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940675	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71548716	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738268	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739772	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740476	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741170	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742607	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744190	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749032	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750528	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750775	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750877	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754550	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757446	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759422	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759648	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760919	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767608	0.81[AFR][1000 genomes]
rs7770458	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771832	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9450714	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018155	chr6:88049729-88272862	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031961	chr6:88110401-88367006	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1031460	chr6:88153079-88410050	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1026482	chr6:88164934-88409728	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1027706	chr6:88168987-88409728	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88194000-88249000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:88217800-88295800	Weak transcription	Fetal Brain Male	brain
3	chr6:88219000-88249000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:88225000-88250800	Weak transcription	Stomach Mucosa	stomach
5	chr6:88227000-88250200	Weak transcription	Fetal Heart	heart
6	chr6:88227800-88298800	Weak transcription	Esophagus	oesophagus
7	chr6:88228400-88250200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:88228400-88298400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:88228600-88249800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:88228600-88254000	Weak transcription	Gastric	stomach
11	chr6:88228600-88262800	Weak transcription	Small Intestine	intestine
12	chr6:88228600-88271400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:88228600-88285200	Weak transcription	Spleen	Spleen
14	chr6:88228800-88253800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:88228800-88269600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:88229400-88248800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:88229400-88248800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:88229400-88249000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:88229400-88261600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:88229400-88271200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr6:88229600-88254000	Weak transcription	Brain Anterior Caudate	brain
22	chr6:88229600-88289000	Weak transcription	Lung	lung
23	chr6:88230000-88249200	Weak transcription	Fetal Lung	lung
24	chr6:88230000-88267000	Weak transcription	Brain Substantia Nigra	brain
25	chr6:88230400-88271200	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:88230600-88248600	Weak transcription	HMEC	breast
27	chr6:88230600-88249000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:88230600-88254400	Weak transcription	Psoas Muscle	Psoas
29	chr6:88230800-88249000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr6:88230800-88249000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr6:88230800-88249800	Weak transcription	Ovary	ovary
32	chr6:88230800-88250600	Weak transcription	HSMMtube	muscle
33	chr6:88230800-88261600	Weak transcription	Brain Hippocampus Middle	brain
34	chr6:88231200-88262800	Weak transcription	Brain Angular Gyrus	brain
35	chr6:88231200-88264200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr6:88237000-88248600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:88237000-88249200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:88237800-88248800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:88237800-88248800	Weak transcription	GM12878-XiMat	blood
40	chr6:88238000-88249000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr6:88238800-88253200	Weak transcription	K562	blood
42	chr6:88239200-88250400	Weak transcription	HUVEC	blood vessel
43	chr6:88240000-88253800	Weak transcription	Right Ventricle	heart
44	chr6:88240200-88249000	Weak transcription	A549	lung
45	chr6:88240200-88249200	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr6:88240200-88250200	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr6:88240200-88254000	Weak transcription	Colonic Mucosa	Colon
48	chr6:88240600-88248800	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr6:88240600-88248800	Weak transcription	Fetal Kidney	kidney
50	chr6:88240600-88249000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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