Variant report

Variant	rs35363104
Chromosome Location	chr6:88292301-88292302
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:88292221..88295024-chr6:88463844..88466637,2	K562	blood:
2	chr6:88285212..88293434-chr6:88297589..88302538,14	K562	blood:
3	chr6:88285921..88288874-chr6:88289679..88293937,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135336	Chromatin interaction
ENSG00000146282	Chromatin interaction

Extended variants
information (count: 194 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:189)

rs_ID	r²[population]
rs13192889	0.82[EUR][1000 genomes]
rs13193193	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs13193303	0.93[EUR][1000 genomes]
rs13193470	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13193703	0.93[EUR][1000 genomes]
rs13193911	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13193927	0.93[EUR][1000 genomes]
rs13196538	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13196755	0.93[EUR][1000 genomes]
rs13197090	0.93[EUR][1000 genomes]
rs13198094	0.93[EUR][1000 genomes]
rs13200106	0.93[EUR][1000 genomes]
rs13202825	0.93[EUR][1000 genomes]
rs13203056	0.93[EUR][1000 genomes]
rs13203649	0.93[EUR][1000 genomes]
rs13203790	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13203957	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13204592	0.93[EUR][1000 genomes]
rs13204861	0.93[EUR][1000 genomes]
rs13205357	0.80[EUR][1000 genomes]
rs13206240	0.83[EUR][1000 genomes]
rs13206485	0.80[EUR][1000 genomes]
rs13206536	0.93[EUR][1000 genomes]
rs13206957	0.93[EUR][1000 genomes]
rs13208201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13208550	0.93[EUR][1000 genomes]
rs13208933	0.93[EUR][1000 genomes]
rs13210643	0.93[EUR][1000 genomes]
rs13211439	0.93[EUR][1000 genomes]
rs13211833	1.00[AFR][1000 genomes]
rs13212076	0.93[EUR][1000 genomes]
rs13212089	0.93[EUR][1000 genomes]
rs13213285	0.93[EUR][1000 genomes]
rs13213812	0.80[EUR][1000 genomes]
rs13215013	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13215887	0.93[EUR][1000 genomes]
rs13216482	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs13216724	0.93[EUR][1000 genomes]
rs13216727	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13219631	1.00[AFR][1000 genomes]
rs16879475	0.93[EUR][1000 genomes]
rs16879490	0.93[EUR][1000 genomes]
rs16879507	0.93[EUR][1000 genomes]
rs16879510	0.93[EUR][1000 genomes]
rs16879517	0.87[EUR][1000 genomes]
rs16879528	0.93[EUR][1000 genomes]
rs16879532	0.93[EUR][1000 genomes]
rs17454834	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17455002	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17504209	0.93[EUR][1000 genomes]
rs17504475	0.93[EUR][1000 genomes]
rs17504517	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2273130	0.80[EUR][1000 genomes]
rs2273131	0.93[EUR][1000 genomes]
rs2307383	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2307389	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2307393	0.87[EUR][1000 genomes]
rs28360511	0.93[EUR][1000 genomes]
rs28381452	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28381487	0.93[EUR][1000 genomes]
rs28381518	0.87[EUR][1000 genomes]
rs28381552	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs28385570	0.93[EUR][1000 genomes]
rs28385591	0.93[EUR][1000 genomes]
rs28385632	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34006571	0.87[EUR][1000 genomes]
rs34007246	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs34008333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34054042	0.80[EUR][1000 genomes]
rs34054261	0.93[EUR][1000 genomes]
rs34107692	0.93[EUR][1000 genomes]
rs34154420	0.93[EUR][1000 genomes]
rs34220026	0.80[EUR][1000 genomes]
rs34369446	0.80[EUR][1000 genomes]
rs34385811	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34395299	0.93[EUR][1000 genomes]
rs34423353	0.87[EUR][1000 genomes]
rs34455158	0.93[EUR][1000 genomes]
rs34540725	0.93[EUR][1000 genomes]
rs34547532	0.93[EUR][1000 genomes]
rs34650015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34727395	0.93[EUR][1000 genomes]
rs34926624	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34941612	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35031351	0.93[EUR][1000 genomes]
rs35056836	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35058527	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs35116392	0.93[EUR][1000 genomes]
rs35145047	0.87[EUR][1000 genomes]
rs35234062	0.80[EUR][1000 genomes]
rs35237504	0.93[EUR][1000 genomes]
rs35289945	0.93[EUR][1000 genomes]
rs35303040	0.93[EUR][1000 genomes]
rs35317752	0.93[EUR][1000 genomes]
rs35324020	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35350424	0.93[EUR][1000 genomes]
rs35396056	0.93[EUR][1000 genomes]
rs35440627	1.00[AFR][1000 genomes]
rs35465301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35494431	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35504787	0.93[EUR][1000 genomes]
rs35593940	0.93[EUR][1000 genomes]
rs35607770	1.00[AFR][1000 genomes]
rs35610797	0.93[EUR][1000 genomes]
rs35679038	0.93[EUR][1000 genomes]
rs35688969	0.83[EUR][1000 genomes]
rs35866706	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs35903880	0.93[EUR][1000 genomes]
rs35917348	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35925514	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35946241	0.87[EUR][1000 genomes]
rs35965137	1.00[AFR][1000 genomes]
rs35972482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36020402	0.93[EUR][1000 genomes]
rs36041712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36090981	0.87[EUR][1000 genomes]
rs3734908	0.93[EUR][1000 genomes]
rs3757369	0.93[EUR][1000 genomes]
rs3757371	0.93[EUR][1000 genomes]
rs3763176	1.00[AFR][1000 genomes]
rs3800551	0.80[EUR][1000 genomes]
rs3823469	0.80[EUR][1000 genomes]
rs4409162	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4587137	0.93[EUR][1000 genomes]
rs55686846	1.00[AFR][1000 genomes]
rs55751639	0.93[EUR][1000 genomes]
rs55759644	0.93[EUR][1000 genomes]
rs55765303	0.93[EUR][1000 genomes]
rs55766457	0.80[EUR][1000 genomes]
rs55880748	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55960393	0.80[EUR][1000 genomes]
rs56031077	0.93[EUR][1000 genomes]
rs57526195	0.87[EUR][1000 genomes]
rs59361639	0.80[EUR][1000 genomes]
rs60313720	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs61432898	1.00[AFR][1000 genomes]
rs62417663	0.93[EUR][1000 genomes]
rs62417666	0.93[EUR][1000 genomes]
rs62417673	0.93[EUR][1000 genomes]
rs62417674	0.93[EUR][1000 genomes]
rs62417675	0.93[EUR][1000 genomes]
rs62417676	0.93[EUR][1000 genomes]
rs62417686	0.93[EUR][1000 genomes]
rs62417689	0.90[EUR][1000 genomes]
rs62417692	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs62417693	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs62417698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62417699	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62417700	1.00[AFR][1000 genomes]
rs62417701	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62417715	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62417720	0.93[EUR][1000 genomes]
rs62417727	0.87[EUR][1000 genomes]
rs62417753	1.00[AFR][1000 genomes]
rs62417757	1.00[AFR][1000 genomes]
rs62419368	1.00[AFR][1000 genomes]
rs62419377	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62419378	0.80[EUR][1000 genomes]
rs62419386	0.93[EUR][1000 genomes]
rs6900057	0.93[EUR][1000 genomes]
rs6902069	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6905345	0.93[EUR][1000 genomes]
rs6905480	0.93[EUR][1000 genomes]
rs6911442	0.87[EUR][1000 genomes]
rs6911548	0.93[EUR][1000 genomes]
rs6917424	0.87[EUR][1000 genomes]
rs6926321	0.93[EUR][1000 genomes]
rs6927654	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6927826	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6929542	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940675	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71548716	0.93[EUR][1000 genomes]
rs7738268	0.93[EUR][1000 genomes]
rs7739772	0.93[EUR][1000 genomes]
rs7740476	0.93[EUR][1000 genomes]
rs7741170	0.93[EUR][1000 genomes]
rs7742607	0.93[EUR][1000 genomes]
rs7744190	0.93[EUR][1000 genomes]
rs7749032	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7750528	0.93[EUR][1000 genomes]
rs7750775	0.93[EUR][1000 genomes]
rs7750877	0.90[EUR][1000 genomes]
rs7754550	0.90[EUR][1000 genomes]
rs7757446	0.93[EUR][1000 genomes]
rs7759422	0.93[EUR][1000 genomes]
rs7759648	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7760919	0.93[EUR][1000 genomes]
rs7770458	0.93[EUR][1000 genomes]
rs7771832	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031961	chr6:88110401-88367006	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1031460	chr6:88153079-88410050	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1026482	chr6:88164934-88409728	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1027706	chr6:88168987-88409728	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv538354	chr6:88273858-88311606	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88217800-88295800	Weak transcription	Fetal Brain Male	brain
2	chr6:88227800-88298800	Weak transcription	Esophagus	oesophagus
3	chr6:88228400-88298400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:88256200-88297600	Weak transcription	Right Ventricle	heart
5	chr6:88256400-88295800	Weak transcription	Gastric	stomach
6	chr6:88272200-88297000	Weak transcription	Brain Germinal Matrix	brain
7	chr6:88272400-88296000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:88272400-88297400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:88272400-88297400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:88273000-88296000	Weak transcription	Brain Substantia Nigra	brain
11	chr6:88273600-88292400	Weak transcription	Hela-S3	cervix
12	chr6:88273600-88298200	Weak transcription	Fetal Kidney	kidney
13	chr6:88274200-88295000	Weak transcription	NHLF	lung
14	chr6:88274800-88298800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:88278800-88297400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:88283000-88296600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:88283000-88297000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:88283000-88298600	Weak transcription	Aorta	Aorta
19	chr6:88284400-88293800	Weak transcription	Small Intestine	intestine
20	chr6:88284400-88298000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:88284800-88298200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:88285200-88293600	Weak transcription	Fetal Heart	heart
23	chr6:88285200-88297400	Weak transcription	Brain Anterior Caudate	brain
24	chr6:88285400-88293800	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:88285400-88295600	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr6:88285400-88297200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr6:88285400-88297600	Weak transcription	Pancreas	Pancrea
28	chr6:88285600-88295800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr6:88285600-88295800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr6:88285600-88296000	Weak transcription	Psoas Muscle	Psoas
31	chr6:88285600-88298200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:88285800-88294000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:88285800-88296000	Weak transcription	Spleen	Spleen
34	chr6:88286600-88295800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:88286600-88297800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:88286800-88295000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:88286800-88297800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:88287200-88293200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr6:88288600-88296400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:88288800-88293000	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr6:88288800-88293000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:88288800-88294400	Strong transcription	Liver	Liver
43	chr6:88289000-88292600	Strong transcription	Fetal Muscle Leg	muscle
44	chr6:88289000-88293000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr6:88289000-88293800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:88289000-88294200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:88289000-88294800	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr6:88289000-88295000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:88289000-88296400	Strong transcription	K562	blood
50	chr6:88289200-88292400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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