Variant report
| Variant | rs62419368 |
|---|---|
| Chromosome Location | chr6:88149409-88149410 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:88144877..88146719-chr6:88147665..88149814,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000213204 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs13193193 | 1.00[AFR][1000 genomes] |
| rs13196538 | 1.00[AFR][1000 genomes] |
| rs13208201 | 1.00[AFR][1000 genomes] |
| rs13211720 | 0.89[AMR][1000 genomes] |
| rs13215013 | 1.00[AFR][1000 genomes] |
| rs13216482 | 1.00[AFR][1000 genomes] |
| rs13216727 | 1.00[AFR][1000 genomes] |
| rs171399 | 0.84[AMR][1000 genomes] |
| rs17454834 | 1.00[AFR][1000 genomes] |
| rs17455002 | 1.00[AFR][1000 genomes] |
| rs17504517 | 1.00[AFR][1000 genomes] |
| rs2307389 | 1.00[AFR][1000 genomes] |
| rs34007246 | 1.00[AFR][1000 genomes] |
| rs34008333 | 1.00[AFR][1000 genomes] |
| rs34650015 | 1.00[AFR][1000 genomes] |
| rs34941612 | 1.00[AFR][1000 genomes] |
| rs35056836 | 1.00[AFR][1000 genomes] |
| rs35363104 | 1.00[AFR][1000 genomes] |
| rs35465301 | 1.00[AFR][1000 genomes] |
| rs35866706 | 1.00[AFR][1000 genomes] |
| rs35925514 | 1.00[AFR][1000 genomes] |
| rs36041712 | 1.00[AFR][1000 genomes] |
| rs4409162 | 1.00[AFR][1000 genomes] |
| rs55880748 | 1.00[AFR][1000 genomes] |
| rs62417692 | 1.00[AFR][1000 genomes] |
| rs62417693 | 1.00[AFR][1000 genomes] |
| rs62417698 | 1.00[AFR][1000 genomes] |
| rs62417700 | 1.00[AFR][1000 genomes] |
| rs62417715 | 1.00[AFR][1000 genomes] |
| rs62419377 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018155 | chr6:88049729-88272862 | Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv830722 | chr6:88054186-88223625 | Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv1031961 | chr6:88110401-88367006 | Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
