Variant report

Variant	rs62419466
Chromosome Location	chr6:88438383-88438384
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:88432657..88435151-chr6:88437657..88440381,2	K562	blood:
2	chr6:88436022..88438583-chr6:88439057..88441989,2	MCF-7	breast:
3	chr6:88432902..88435557-chr6:88436899..88439269,3	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12190021	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12192057	0.82[EUR][1000 genomes]
rs12193728	0.82[EUR][1000 genomes]
rs12203759	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12209285	0.82[EUR][1000 genomes]
rs13211833	0.89[ASN][1000 genomes]
rs13219631	0.89[ASN][1000 genomes]
rs28752032	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34080809	0.89[ASN][1000 genomes]
rs35326820	0.89[ASN][1000 genomes]
rs35440627	0.89[ASN][1000 genomes]
rs35607770	0.89[ASN][1000 genomes]
rs35965137	0.89[ASN][1000 genomes]
rs3763176	0.89[ASN][1000 genomes]
rs61432898	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61546689	0.82[EUR][1000 genomes]
rs62417757	0.89[ASN][1000 genomes]
rs62419465	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921294	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758068	chr6:88358988-88441473	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2759454	chr6:88358988-88441473	Strong transcription Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88424600-88439200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:88427600-88439400	Weak transcription	Right Atrium	heart
3	chr6:88429400-88439400	Weak transcription	Esophagus	oesophagus
4	chr6:88433400-88439200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:88433400-88439400	Weak transcription	Spleen	Spleen
6	chr6:88433400-88440400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:88433400-88441200	Weak transcription	Pancreas	Pancrea
8	chr6:88433800-88438400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:88433800-88438600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:88433800-88438600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:88433800-88439400	Weak transcription	Left Ventricle	heart
12	chr6:88433800-88439400	Weak transcription	Right Ventricle	heart
13	chr6:88433800-88439600	Weak transcription	HepG2	liver
14	chr6:88433800-88439800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:88433800-88440400	Weak transcription	HSMM	muscle
16	chr6:88433800-88441200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:88433800-88441400	Weak transcription	Brain Substantia Nigra	brain
18	chr6:88433800-88441400	Weak transcription	HSMMtube	muscle
19	chr6:88433800-88441600	Weak transcription	NHLF	lung
20	chr6:88433800-88441800	Weak transcription	Brain Angular Gyrus	brain
21	chr6:88434800-88441400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:88435200-88440400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:88435400-88441400	Weak transcription	Adipose Nuclei	Adipose
24	chr6:88435600-88438600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr6:88435600-88440200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:88435600-88440200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:88435600-88440400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:88435600-88441000	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr6:88435600-88441200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:88435600-88441400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr6:88435800-88440200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:88435800-88440200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:88436000-88438400	Weak transcription	GM12878-XiMat	blood
34	chr6:88436000-88439200	Weak transcription	Psoas Muscle	Psoas
35	chr6:88436000-88440200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:88436000-88440200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:88436200-88439400	Weak transcription	Thymus	Thymus
38	chr6:88436400-88440200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr6:88437000-88438600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr6:88437000-88440400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:88437200-88440200	Enhancers	NHEK	skin
42	chr6:88437200-88441200	Enhancers	HMEC	breast
43	chr6:88437400-88438800	Enhancers	NHDF-Ad	bronchial
44	chr6:88437400-88439200	Weak transcription	Fetal Thymus	thymus
45	chr6:88437400-88440200	Enhancers	A549	lung
46	chr6:88437400-88440400	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr6:88437400-88441800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:88437600-88439200	Weak transcription	Colonic Mucosa	Colon
49	chr6:88437600-88440400	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr6:88437800-88438400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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