Variant report

Variant	rs12192057
Chromosome Location	chr6:88449114-88449115
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12193728	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194652	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209285	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4339426	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59704833	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61546689	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62419466	0.82[EUR][1000 genomes]
rs6921294	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744213	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88442600-88451600	Weak transcription	Primary B cells from cord blood	blood
2	chr6:88447000-88449400	Enhancers	Primary T cells fromperipheralblood	blood
3	chr6:88447200-88449400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:88447400-88449200	Enhancers	GM12878-XiMat	blood
5	chr6:88448000-88451600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr6:88448000-88451800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:88448200-88451000	Weak transcription	K562	blood
8	chr6:88448200-88452000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:88448200-88455000	Weak transcription	HepG2	liver
10	chr6:88448400-88451400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:88448400-88451600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:88448400-88452000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:88449000-88449200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:88449000-88451000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:88449000-88451600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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