Variant report

Variant	rs12209285
Chromosome Location	chr6:88474103-88474104
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12192057	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193728	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194652	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4339426	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59704833	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61546689	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62419466	0.82[EUR][1000 genomes]
rs6921294	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744213	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88457800-88482400	Weak transcription	Placenta	Placenta
2	chr6:88467000-88475800	Weak transcription	Fetal Lung	lung
3	chr6:88472600-88475800	Weak transcription	HepG2	liver
4	chr6:88472800-88481600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:88473600-88474200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:88473600-88474200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:88473600-88474200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:88473600-88474200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:88473600-88474200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:88473800-88474200	Enhancers	Spleen	Spleen
11	chr6:88473800-88474200	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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