Variant report

Variant	rs2875297
Chromosome Location	chr13:39882505-39882506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LHFP-5	chr13:39882372-39883459	NONHSAT033299

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1184363	0.85[ASN][1000 genomes]
rs12428106	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17059648	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59437391	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs60295103	0.93[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6563694	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7323831	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7326130	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7326819	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7328301	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73465608	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73465611	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73465621	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73465684	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73465685	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs747183	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs747184	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs747185	1.00[EUR][1000 genomes]
rs7982948	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7995074	1.00[EUR][1000 genomes]
rs7995662	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7996373	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs8000195	0.96[EUR][1000 genomes]
rs8000853	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39879200-39885200	Weak transcription	Fetal Muscle Leg	muscle
2	chr13:39881600-39885800	Weak transcription	Aorta	Aorta

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