Variant report

Variant	rs7323831
Chromosome Location	chr13:39891818-39891819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1184363	0.96[ASN][1000 genomes]
rs12428106	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17059648	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2181759	0.90[GIH][hapmap];0.86[JPT][hapmap]
rs2875297	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59437391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60295103	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6563694	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7326130	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7326819	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7328301	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7332991	0.86[JPT][hapmap]
rs73465608	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73465611	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73465621	0.90[ASN][1000 genomes]
rs73465684	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73465685	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs747183	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs747184	0.89[ASN][1000 genomes]
rs7982948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996373	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8000853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39886400-39896600	Weak transcription	Aorta	Aorta
2	chr13:39890200-39892200	Enhancers	Adipose Nuclei	Adipose
3	chr13:39890600-39894400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:39890800-39892000	Enhancers	Brain Hippocampus Middle	brain
5	chr13:39890800-39892000	Enhancers	Right Atrium	heart
6	chr13:39890800-39892200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr13:39890800-39892200	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr13:39890800-39892200	Enhancers	Fetal Lung	lung
9	chr13:39890800-39892200	Enhancers	NHLF	lung
10	chr13:39891000-39892000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr13:39891000-39892000	Enhancers	Brain Substantia Nigra	brain
12	chr13:39891000-39892000	Enhancers	Stomach Smooth Muscle	stomach
13	chr13:39891000-39892200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr13:39891000-39892600	Enhancers	Fetal Muscle Leg	muscle
15	chr13:39891000-39892600	Enhancers	Ovary	ovary
16	chr13:39891000-39899200	Weak transcription	Fetal Heart	heart
17	chr13:39891200-39892000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr13:39891200-39892000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr13:39891400-39892000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr13:39891400-39892000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr13:39891400-39892000	Enhancers	Brain Cingulate Gyrus	brain
22	chr13:39891400-39892200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr13:39891400-39893400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr13:39891600-39892200	Weak transcription	Colon Smooth Muscle	Colon
25	chr13:39891600-39893400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr13:39891600-39893400	Weak transcription	Lung	lung
27	chr13:39891600-39893400	Weak transcription	Right Ventricle	heart
28	chr13:39891800-39893400	Weak transcription	Left Ventricle	heart
29	chr13:39891800-39894000	Weak transcription	Fetal Stomach	stomach
30	chr13:39891800-39895800	Weak transcription	Brain Angular Gyrus	brain
31	chr13:39891800-39895800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr13:39891800-39896200	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links