Variant report

Variant	rs7995662
Chromosome Location	chr13:39892752-39892753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1184363	0.96[ASN][1000 genomes]
rs12428106	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17059648	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2875297	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59437391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60295103	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6563694	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7323831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7326130	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7326819	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7328301	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73465608	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73465611	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73465621	0.90[ASN][1000 genomes]
rs73465684	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73465685	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs747183	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs747184	0.89[ASN][1000 genomes]
rs7982948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996373	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8000853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39886400-39896600	Weak transcription	Aorta	Aorta
2	chr13:39890600-39894400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:39891000-39899200	Weak transcription	Fetal Heart	heart
4	chr13:39891400-39893400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr13:39891600-39893400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr13:39891600-39893400	Weak transcription	Lung	lung
7	chr13:39891600-39893400	Weak transcription	Right Ventricle	heart
8	chr13:39891800-39893400	Weak transcription	Left Ventricle	heart
9	chr13:39891800-39894000	Weak transcription	Fetal Stomach	stomach
10	chr13:39891800-39895800	Weak transcription	Brain Angular Gyrus	brain
11	chr13:39891800-39895800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr13:39891800-39896200	Weak transcription	Brain Anterior Caudate	brain
13	chr13:39892000-39893400	Weak transcription	Right Atrium	heart
14	chr13:39892000-39895200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr13:39892000-39895800	Weak transcription	Brain Hippocampus Middle	brain
16	chr13:39892000-39895800	Weak transcription	Brain Substantia Nigra	brain
17	chr13:39892000-39896400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr13:39892000-39896400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr13:39892000-39896600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr13:39892000-39897200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr13:39892200-39893400	Weak transcription	Adipose Nuclei	Adipose
22	chr13:39892200-39896000	Weak transcription	Fetal Lung	lung
23	chr13:39892200-39896200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr13:39892200-39901200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr13:39892600-39893000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr13:39892600-39895200	Weak transcription	Ovary	ovary

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