Variant report

Variant	rs28753894
Chromosome Location	chr4:119009138-119009139
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10002892	0.86[AFR][1000 genomes]
rs10004800	0.89[AFR][1000 genomes]
rs10007381	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10007959	0.86[AFR][1000 genomes]
rs10012359	0.91[AFR][1000 genomes]
rs10015485	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10025979	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10030449	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10213202	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11933537	0.86[AFR][1000 genomes]
rs11935016	1.00[MEX][hapmap]
rs11943650	0.86[AFR][1000 genomes]
rs11944865	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11947605	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28507472	0.86[AFR][1000 genomes]
rs28723489	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28768382	0.91[AFR][1000 genomes]
rs41520948	1.00[MEX][hapmap]
rs6842651	0.83[AFR][1000 genomes]
rs72907180	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1009076	chr4:118949490-119269424	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1001236	chr4:118949490-119271243	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv879839	chr4:118967196-119010126	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1008236	chr4:118989467-119154024	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv999152	chr4:119001143-119138322	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119006800-119009200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:119007000-119009200	Enhancers	HUVEC	blood vessel
3	chr4:119008800-119013800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:119009000-119011200	Strong transcription	Dnd41	blood

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