Variant report

Variant	rs10004800
Chromosome Location	chr4:119032859-119032860
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10002892	0.89[AFR][1000 genomes]
rs10007381	0.89[AFR][1000 genomes]
rs10007959	0.89[AFR][1000 genomes]
rs10012359	0.93[AFR][1000 genomes]
rs10015485	0.93[AFR][1000 genomes]
rs10025979	0.98[AFR][1000 genomes]
rs10030449	0.98[AFR][1000 genomes]
rs10034646	1.00[EUR][1000 genomes]
rs10213202	0.98[AFR][1000 genomes]
rs11933537	0.89[AFR][1000 genomes]
rs11943650	0.89[AFR][1000 genomes]
rs11944865	0.93[AFR][1000 genomes]
rs11947605	0.98[AFR][1000 genomes]
rs17515651	1.00[EUR][1000 genomes]
rs28507472	0.89[AFR][1000 genomes]
rs28723489	0.91[AFR][1000 genomes]
rs28753894	0.89[AFR][1000 genomes]
rs28768382	0.93[AFR][1000 genomes]
rs60418385	1.00[EUR][1000 genomes]
rs6842651	0.85[AFR][1000 genomes]
rs72903395	1.00[EUR][1000 genomes]
rs72905214	1.00[EUR][1000 genomes]
rs72907133	1.00[EUR][1000 genomes]
rs72907180	0.84[AFR][1000 genomes]
rs72911368	1.00[EUR][1000 genomes]
rs72911370	1.00[EUR][1000 genomes]
rs72913437	1.00[EUR][1000 genomes]
rs72913439	1.00[EUR][1000 genomes]
rs72913442	1.00[EUR][1000 genomes]
rs72913447	1.00[EUR][1000 genomes]
rs72913461	1.00[EUR][1000 genomes]
rs72915443	1.00[EUR][1000 genomes]
rs7699041	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1009076	chr4:118949490-119269424	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1001236	chr4:118949490-119271243	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1008236	chr4:118989467-119154024	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv999152	chr4:119001143-119138322	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3468277	chr4:119032811-119033368	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119025000-119033000	Strong transcription	Dnd41	blood
2	chr4:119031600-119033400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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