Variant report
Variant | rs10034646 |
---|---|
Chromosome Location | chr4:118830846-118830847 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
(count:1 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-NDST3-8 | chr4:118829539-118831628 | NONHSAT097964 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10004800 | 1.00[EUR][1000 genomes] |
rs58114689 | 0.85[AFR][1000 genomes] |
rs72903395 | 1.00[EUR][1000 genomes] |
rs72905214 | 1.00[EUR][1000 genomes] |
rs72907133 | 1.00[EUR][1000 genomes] |
rs72911368 | 1.00[EUR][1000 genomes] |
rs72911370 | 1.00[EUR][1000 genomes] |
rs72913437 | 1.00[EUR][1000 genomes] |
rs72913439 | 1.00[EUR][1000 genomes] |
rs72913442 | 1.00[EUR][1000 genomes] |
rs72913447 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs72913461 | 1.00[EUR][1000 genomes] |
rs72915443 | 1.00[EUR][1000 genomes] |
rs7699041 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv482390 | chr4:118804378-118944823 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
2 | nsv519017 | chr4:118828807-119771481 | Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
No data |