Variant report

Variant	rs72913439
Chromosome Location	chr4:118824568-118824569
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10004800	1.00[EUR][1000 genomes]
rs10034646	1.00[EUR][1000 genomes]
rs72903395	1.00[EUR][1000 genomes]
rs72905214	1.00[EUR][1000 genomes]
rs72907133	1.00[EUR][1000 genomes]
rs72911368	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72911370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72913437	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72913442	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72913447	1.00[EUR][1000 genomes]
rs72913461	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72915443	1.00[EUR][1000 genomes]
rs7699041	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482390	chr4:118804378-118944823	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118822600-118826600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:118823200-118826200	Weak transcription	Stomach Mucosa	stomach
3	chr4:118824200-118824600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:118824200-118824600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:118824200-118825600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:118824400-118824600	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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