Variant report

Variant	rs28757812
Chromosome Location	chr16:79880719-79880720
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:79868315..79871347-chr16:79879608..79882183,3	K562	blood:
2	chr16:79876074..79877931-chr16:79879588..79883797,3	K562	blood:
3	chr16:79877945..79879794-chr16:79880017..79882349,2	MCF-7	breast:
4	chr16:79873710..79876055-chr16:79879672..79882063,2	K562	blood:
5	chr16:79871932..79877574-chr16:79878123..79882364,6	K562	blood:
6	chr16:79879070..79882404-chr16:79882481..79885760,4	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10400993	1.00[AMR][1000 genomes]
rs12102812	1.00[AMR][1000 genomes]
rs13333097	1.00[AMR][1000 genomes]
rs13335246	1.00[AMR][1000 genomes]
rs13336479	1.00[AMR][1000 genomes]
rs13338029	1.00[AMR][1000 genomes]
rs28534697	1.00[AMR][1000 genomes]
rs28537940	1.00[AMR][1000 genomes]
rs28621047	1.00[AMR][1000 genomes]
rs28658309	1.00[AMR][1000 genomes]
rs4296270	1.00[AMR][1000 genomes]
rs61321663	1.00[AMR][1000 genomes]
rs61617481	1.00[AMR][1000 genomes]
rs7190702	1.00[AMR][1000 genomes]
rs7201541	1.00[AMR][1000 genomes]
rs73581915	1.00[AMR][1000 genomes]
rs73581939	1.00[AMR][1000 genomes]
rs9925324	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9925546	1.00[AMR][1000 genomes]
rs9929728	1.00[AMR][1000 genomes]
rs9931740	1.00[AMR][1000 genomes]
rs9933996	1.00[AMR][1000 genomes]
rs9937545	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1059511	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv542984	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79876000-79882400	Weak transcription	Fetal Lung	lung
2	chr16:79878000-79881200	Weak transcription	Pancreas	Pancrea
3	chr16:79878200-79880800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr16:79878200-79881000	Enhancers	Primary hematopoietic stem cells	blood
5	chr16:79879200-79882400	Weak transcription	Fetal Stomach	stomach
6	chr16:79879600-79885200	Enhancers	Thymus	Thymus
7	chr16:79879800-79884600	Enhancers	Fetal Thymus	thymus
8	chr16:79880000-79881600	Enhancers	GM12878-XiMat	blood
9	chr16:79880000-79883400	Weak transcription	Primary T cells from cord blood	blood
10	chr16:79880200-79881800	Enhancers	K562	blood
11	chr16:79880400-79882600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr16:79880600-79881800	Enhancers	Esophagus	oesophagus
13	chr16:79880600-79884800	Enhancers	NHEK	skin

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