Variant report

Variant	rs61321663
Chromosome Location	chr16:79752641-79752642
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10400993	1.00[AMR][1000 genomes]
rs12102812	1.00[AMR][1000 genomes]
rs28537940	1.00[AMR][1000 genomes]
rs28621047	1.00[AMR][1000 genomes]
rs28658309	1.00[AMR][1000 genomes]
rs28757812	1.00[AMR][1000 genomes]
rs4296270	1.00[AMR][1000 genomes]
rs61617481	1.00[AMR][1000 genomes]
rs7190702	1.00[AMR][1000 genomes]
rs7201541	1.00[AMR][1000 genomes]
rs73571213	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73571225	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73571226	1.00[AMR][1000 genomes]
rs73571228	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73571232	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573128	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573132	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9925324	1.00[AMR][1000 genomes]
rs9925546	1.00[AMR][1000 genomes]
rs9929728	1.00[AMR][1000 genomes]
rs9931740	1.00[AMR][1000 genomes]
rs9937545	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv906992	chr16:79649394-79769790	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79748000-79756200	Weak transcription	Gastric	stomach
2	chr16:79748200-79760400	Enhancers	Fetal Intestine Small	intestine
3	chr16:79748400-79760800	Enhancers	Fetal Intestine Large	intestine
4	chr16:79749000-79754800	Weak transcription	Colon Smooth Muscle	Colon
5	chr16:79749800-79754000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr16:79749800-79754400	Weak transcription	Liver	Liver
7	chr16:79749800-79754800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr16:79749800-79756400	Weak transcription	Stomach Mucosa	stomach
9	chr16:79750800-79754600	Weak transcription	Ovary	ovary
10	chr16:79751000-79755200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr16:79751600-79755400	Weak transcription	Aorta	Aorta
12	chr16:79751600-79755800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr16:79752000-79755200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr16:79752000-79755600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr16:79752000-79755800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr16:79752000-79756000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr16:79752000-79757400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr16:79752200-79754200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr16:79752200-79754400	Weak transcription	Fetal Kidney	kidney
20	chr16:79752200-79754600	Weak transcription	Fetal Lung	lung
21	chr16:79752200-79755200	Weak transcription	Fetal Muscle Leg	muscle
22	chr16:79752200-79756400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr16:79752400-79757600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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