Variant report

Variant	rs73573128
Chromosome Location	chr16:79731250-79731251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10400993	1.00[AMR][1000 genomes]
rs12102812	1.00[AMR][1000 genomes]
rs28537940	1.00[AMR][1000 genomes]
rs28621047	1.00[AMR][1000 genomes]
rs28658309	1.00[AMR][1000 genomes]
rs4296270	1.00[AMR][1000 genomes]
rs61321663	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61617481	1.00[AMR][1000 genomes]
rs7190702	1.00[AMR][1000 genomes]
rs7201541	1.00[AMR][1000 genomes]
rs73571213	1.00[AMR][1000 genomes]
rs73571225	1.00[AMR][1000 genomes]
rs73571226	1.00[AMR][1000 genomes]
rs73571228	1.00[AMR][1000 genomes]
rs73571232	1.00[AMR][1000 genomes]
rs73573103	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573110	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9925546	1.00[AMR][1000 genomes]
rs9929728	1.00[AMR][1000 genomes]
rs9931740	1.00[AMR][1000 genomes]
rs9937545	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv906992	chr16:79649394-79769790	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79720400-79736800	Weak transcription	Aorta	Aorta
2	chr16:79725200-79732200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:79725400-79731800	Weak transcription	NHLF	lung
4	chr16:79727800-79732400	Weak transcription	Fetal Heart	heart
5	chr16:79729800-79731400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr16:79731000-79732600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr16:79731200-79732400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr16:79731200-79733400	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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