Variant report

Variant	rs7190702
Chromosome Location	chr16:79831401-79831402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10400993	1.00[AMR][1000 genomes]
rs12102812	1.00[AMR][1000 genomes]
rs13333097	1.00[AMR][1000 genomes]
rs13335246	1.00[AMR][1000 genomes]
rs13336479	1.00[AMR][1000 genomes]
rs13338029	1.00[AMR][1000 genomes]
rs28537940	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28621047	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28658309	1.00[AMR][1000 genomes]
rs28757812	1.00[AMR][1000 genomes]
rs4296270	1.00[AMR][1000 genomes]
rs61321663	1.00[AMR][1000 genomes]
rs61617481	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7201541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73571213	1.00[AMR][1000 genomes]
rs73571225	1.00[AMR][1000 genomes]
rs73571226	1.00[AMR][1000 genomes]
rs73571228	1.00[AMR][1000 genomes]
rs73571232	1.00[AMR][1000 genomes]
rs73573103	1.00[AMR][1000 genomes]
rs73573110	1.00[AMR][1000 genomes]
rs73573128	1.00[AMR][1000 genomes]
rs73573132	1.00[AMR][1000 genomes]
rs9925324	1.00[AMR][1000 genomes]
rs9925546	1.00[AMR][1000 genomes]
rs9929728	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9931740	1.00[AMR][1000 genomes]
rs9933996	1.00[AMR][1000 genomes]
rs9937545	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79814000-79839600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:79831200-79839400	Weak transcription	Fetal Lung	lung
3	chr16:79831400-79832200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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