Variant report

Variant	rs28758371
Chromosome Location	chr3:155678714-155678715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13327285	1.00[AMR][1000 genomes]
rs28616803	1.00[AMR][1000 genomes]
rs28655132	1.00[AMR][1000 genomes]
rs6791517	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73011105	1.00[AMR][1000 genomes]
rs9819269	1.00[AMR][1000 genomes]
rs9823047	0.83[AMR][1000 genomes]
rs9832621	1.00[AMR][1000 genomes]
rs9855091	1.00[AMR][1000 genomes]
rs9862051	1.00[AMR][1000 genomes]
rs9863571	0.83[AMR][1000 genomes]
rs9868194	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155659800-155678800	Weak transcription	A549	lung
2	chr3:155660400-155688000	Weak transcription	Hela-S3	cervix
3	chr3:155664200-155679200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:155664400-155679200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:155664600-155681200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:155674200-155681600	Weak transcription	NH-A	brain
7	chr3:155677800-155681200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:155678000-155680400	Weak transcription	Osteobl	bone
9	chr3:155678000-155681400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:155678400-155681400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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