Variant report

Variant	rs9863571
Chromosome Location	chr3:155700245-155700246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13327285	0.83[AMR][1000 genomes]
rs28616803	0.83[AMR][1000 genomes]
rs28655132	0.83[AMR][1000 genomes]
rs28758371	0.83[AMR][1000 genomes]
rs6791517	0.83[AMR][1000 genomes]
rs73011105	0.83[AMR][1000 genomes]
rs73014821	0.85[AMR][1000 genomes]
rs73014835	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9819269	0.83[AMR][1000 genomes]
rs9826666	0.87[AFR][1000 genomes]
rs9832621	0.83[AMR][1000 genomes]
rs9855091	0.83[AMR][1000 genomes]
rs9862051	0.83[AMR][1000 genomes]
rs9868194	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155699400-155700400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:155700000-155701800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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