Variant report

Variant	rs9826666
Chromosome Location	chr3:155700644-155700645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155700002..155701632-chr3:155703607..155706090,2	K562	blood:

Variant related genes	Relation type
ENSG00000240489	Chromatin interaction

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10513485	0.86[EUR][1000 genomes]
rs12485698	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12485701	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12485735	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12485742	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12485802	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12486102	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12486189	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12486864	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12487275	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12489430	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12490114	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12491178	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12492156	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12492258	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12493409	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12493654	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12493764	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12493934	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12493963	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12494104	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12494143	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12494730	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12495418	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12496006	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12496097	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12496896	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12497735	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12497838	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12497968	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13088748	0.89[EUR][1000 genomes]
rs1533443	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16825551	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16825554	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16825557	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16825602	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1878212	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2068601	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2292716	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34340793	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35247619	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3732399	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3772114	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3804769	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4108611	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs41267913	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59255899	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61750368	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61750369	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62284864	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62284869	0.86[EUR][1000 genomes]
rs62284871	0.86[EUR][1000 genomes]
rs62284872	0.86[EUR][1000 genomes]
rs62284876	0.86[EUR][1000 genomes]
rs62286780	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62286783	0.89[EUR][1000 genomes]
rs62286784	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62286785	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62286786	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62286788	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62286792	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62286793	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62286794	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62286795	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62286796	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62286797	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62286799	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62286800	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62286801	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62286804	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62286806	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286833	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286834	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286835	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286836	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286837	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286838	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286839	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286840	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286841	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286842	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286843	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286844	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286845	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286846	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286847	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286849	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286850	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286851	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286852	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286853	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286854	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286858	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62286859	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62287760	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62287761	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62287762	0.89[EUR][1000 genomes]
rs62287763	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62287800	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62287801	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62287803	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62287804	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62287805	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62287807	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62287808	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62287809	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62287811	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62287812	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62287813	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62287814	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62287819	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62287820	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62287821	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62287822	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62287823	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62287824	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62287825	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62287826	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62287827	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62287829	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62287855	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62287856	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73014835	0.96[AFR][1000 genomes]
rs73873435	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs968199	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9820541	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9863571	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155700000-155701800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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