Variant report

Variant	rs62287809
Chromosome Location	chr3:155659397-155659398
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155654787..155656552-chr3:155658269..155660391,2	K562	blood:

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10513485	0.83[EUR][1000 genomes]
rs10523298	0.81[ASN][1000 genomes]
rs12485698	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12485701	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12485735	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12485742	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12485802	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12486102	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12486189	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12486864	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12487275	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12489430	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12490114	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12491178	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12492156	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12492258	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12493409	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12493654	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12493764	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12493934	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12493963	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12494104	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12494143	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12494730	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12495418	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12496006	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12496097	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12496896	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12497735	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12497838	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12497968	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13088748	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1533443	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16825551	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16825554	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16825557	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16825602	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1878212	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2068601	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2292716	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34340793	0.93[ASN][1000 genomes]
rs35247619	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3732399	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3772114	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3804769	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4108611	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs41267913	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59255899	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61750368	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61750369	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62284864	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62284869	0.83[EUR][1000 genomes]
rs62284871	0.83[EUR][1000 genomes]
rs62284872	0.83[EUR][1000 genomes]
rs62284876	0.83[EUR][1000 genomes]
rs62286780	0.93[ASN][1000 genomes]
rs62286783	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62286784	0.93[ASN][1000 genomes]
rs62286785	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62286786	0.93[ASN][1000 genomes]
rs62286788	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62286792	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62286793	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62286794	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62286795	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62286796	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62286797	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62286799	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62286800	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62286801	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62286804	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62286806	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286833	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286834	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286835	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286836	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286837	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286838	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286839	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286840	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286841	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286842	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286843	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286844	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286845	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286846	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286847	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286849	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286850	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286851	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286852	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286853	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286854	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286858	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286859	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62287760	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62287761	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62287762	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62287763	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62287800	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62287801	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62287803	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62287804	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62287805	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62287807	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62287808	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62287811	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62287812	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62287813	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62287814	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62287819	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62287820	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62287821	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62287822	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62287823	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62287824	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62287825	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62287826	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62287827	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62287829	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62287855	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62287856	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6762067	0.80[AFR][1000 genomes]
rs73873435	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs968199	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9820541	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9826666	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155590200-155667400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:155607400-155669000	Weak transcription	Pancreas	Pancrea
3	chr3:155633800-155668200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:155634600-155660600	Weak transcription	Stomach Mucosa	stomach
5	chr3:155635800-155664400	Weak transcription	Gastric	stomach
6	chr3:155639600-155664400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:155639600-155671000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:155644000-155663600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:155644000-155666800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:155644200-155659800	Weak transcription	Brain Angular Gyrus	brain
11	chr3:155644200-155662000	Weak transcription	Brain Germinal Matrix	brain
12	chr3:155644200-155665200	Weak transcription	Fetal Stomach	stomach
13	chr3:155646200-155665200	Weak transcription	Fetal Intestine Small	intestine
14	chr3:155648400-155661800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:155648400-155663000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:155648600-155659400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:155648600-155659600	Strong transcription	Fetal Thymus	thymus
18	chr3:155648600-155659800	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr3:155648600-155659800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr3:155648600-155661000	Strong transcription	Dnd41	blood
21	chr3:155649000-155667400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:155649600-155659800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:155649600-155660400	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr3:155651800-155659800	Strong transcription	A549	lung
25	chr3:155652000-155659600	Strong transcription	Liver	Liver
26	chr3:155652400-155659600	Strong transcription	HUVEC	blood vessel
27	chr3:155652600-155661000	Weak transcription	Fetal Heart	heart
28	chr3:155652800-155659800	Strong transcription	Stomach Smooth Muscle	stomach
29	chr3:155653000-155660400	Strong transcription	Hela-S3	cervix
30	chr3:155653200-155662200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:155653400-155659600	Strong transcription	Muscle Satellite Cultured Cells	--
32	chr3:155654200-155675800	Weak transcription	NHEK	skin
33	chr3:155655000-155659600	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr3:155655200-155659800	Weak transcription	Psoas Muscle	Psoas
35	chr3:155655200-155661200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr3:155655200-155663600	Weak transcription	HSMMtube	muscle
37	chr3:155655200-155666800	Weak transcription	Lung	lung
38	chr3:155655200-155667600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr3:155655400-155662600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr3:155655800-155659800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr3:155655800-155659800	Weak transcription	Brain Hippocampus Middle	brain
42	chr3:155655800-155664200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr3:155656000-155667200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr3:155656200-155670400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr3:155656400-155660400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr3:155656400-155661000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr3:155656400-155661000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr3:155656400-155661000	Weak transcription	Fetal Brain Female	brain
49	chr3:155656400-155661400	Weak transcription	Thymus	Thymus
50	chr3:155656400-155661800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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