Variant report

Variant	rs62284869
Chromosome Location	chr3:155712434-155712435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155709135..155711057-chr3:155711920..155713812,2	MCF-7	breast:

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10513485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12485698	0.85[EUR][1000 genomes]
rs12485701	0.85[EUR][1000 genomes]
rs12485735	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12485742	0.85[EUR][1000 genomes]
rs12485802	0.85[EUR][1000 genomes]
rs12486102	0.85[EUR][1000 genomes]
rs12486189	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12486864	0.85[EUR][1000 genomes]
rs12487275	0.80[EUR][1000 genomes]
rs12489430	0.85[EUR][1000 genomes]
rs12490114	0.85[EUR][1000 genomes]
rs12491178	0.85[EUR][1000 genomes]
rs12492156	0.85[EUR][1000 genomes]
rs12492258	0.85[EUR][1000 genomes]
rs12493409	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12493654	0.80[EUR][1000 genomes]
rs12493764	0.85[EUR][1000 genomes]
rs12493934	0.85[EUR][1000 genomes]
rs12493963	0.85[EUR][1000 genomes]
rs12494104	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12494143	0.85[EUR][1000 genomes]
rs12494730	0.85[EUR][1000 genomes]
rs12495418	0.85[EUR][1000 genomes]
rs12496006	0.85[EUR][1000 genomes]
rs12496097	0.80[EUR][1000 genomes]
rs12496896	0.85[EUR][1000 genomes]
rs12497735	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12497838	0.85[EUR][1000 genomes]
rs13088748	0.80[EUR][1000 genomes]
rs1533443	0.85[EUR][1000 genomes]
rs16825551	0.85[EUR][1000 genomes]
rs16825554	0.85[EUR][1000 genomes]
rs16825557	0.81[EUR][1000 genomes]
rs16825602	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1878212	0.85[EUR][1000 genomes]
rs2068601	0.85[EUR][1000 genomes]
rs2292716	0.85[EUR][1000 genomes]
rs34340793	0.95[EUR][1000 genomes]
rs35247619	0.83[EUR][1000 genomes]
rs3732399	0.85[EUR][1000 genomes]
rs3772114	0.85[EUR][1000 genomes]
rs3804769	0.80[EUR][1000 genomes]
rs4108611	0.85[EUR][1000 genomes]
rs41267913	0.85[EUR][1000 genomes]
rs59255899	0.80[EUR][1000 genomes]
rs61750368	0.85[EUR][1000 genomes]
rs61750369	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62284864	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62284871	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62284872	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62284876	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62284877	0.92[AMR][1000 genomes]
rs62286780	0.95[EUR][1000 genomes]
rs62286783	0.80[EUR][1000 genomes]
rs62286784	0.95[EUR][1000 genomes]
rs62286785	0.80[EUR][1000 genomes]
rs62286786	0.95[EUR][1000 genomes]
rs62286788	0.80[EUR][1000 genomes]
rs62286792	0.80[EUR][1000 genomes]
rs62286793	0.80[EUR][1000 genomes]
rs62286794	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62286795	0.85[EUR][1000 genomes]
rs62286796	0.83[EUR][1000 genomes]
rs62286797	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62286799	0.85[EUR][1000 genomes]
rs62286800	0.85[EUR][1000 genomes]
rs62286801	0.85[EUR][1000 genomes]
rs62286804	0.85[EUR][1000 genomes]
rs62286806	0.85[EUR][1000 genomes]
rs62286833	0.85[EUR][1000 genomes]
rs62286834	0.85[EUR][1000 genomes]
rs62286835	0.85[EUR][1000 genomes]
rs62286836	0.85[EUR][1000 genomes]
rs62286837	0.85[EUR][1000 genomes]
rs62286838	0.85[EUR][1000 genomes]
rs62286839	0.85[EUR][1000 genomes]
rs62286840	0.85[EUR][1000 genomes]
rs62286841	0.85[EUR][1000 genomes]
rs62286842	0.85[EUR][1000 genomes]
rs62286843	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62286844	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62286845	0.85[EUR][1000 genomes]
rs62286846	0.85[EUR][1000 genomes]
rs62286847	0.85[EUR][1000 genomes]
rs62286849	0.85[EUR][1000 genomes]
rs62286850	0.85[EUR][1000 genomes]
rs62286851	0.85[EUR][1000 genomes]
rs62286852	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62286853	0.85[EUR][1000 genomes]
rs62286854	0.85[EUR][1000 genomes]
rs62286858	0.85[EUR][1000 genomes]
rs62287763	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287800	0.85[EUR][1000 genomes]
rs62287801	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287803	0.85[EUR][1000 genomes]
rs62287804	0.85[EUR][1000 genomes]
rs62287805	0.85[EUR][1000 genomes]
rs62287807	0.85[EUR][1000 genomes]
rs62287808	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287809	0.83[EUR][1000 genomes]
rs62287811	0.81[EUR][1000 genomes]
rs62287812	0.85[EUR][1000 genomes]
rs62287813	0.85[EUR][1000 genomes]
rs62287814	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287819	0.83[EUR][1000 genomes]
rs62287820	0.85[EUR][1000 genomes]
rs62287821	0.85[EUR][1000 genomes]
rs62287822	0.85[EUR][1000 genomes]
rs62287823	0.85[EUR][1000 genomes]
rs62287824	0.85[EUR][1000 genomes]
rs62287825	0.85[EUR][1000 genomes]
rs62287826	0.85[EUR][1000 genomes]
rs62287827	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287829	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287855	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287856	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73873435	0.80[EUR][1000 genomes]
rs968199	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9820541	0.85[EUR][1000 genomes]
rs9826666	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155709000-155713600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:155709600-155713600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:155709800-155713600	Weak transcription	NHEK	skin

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