Variant report

Variant	rs12487275
Chromosome Location	chr3:155581335-155581336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:155569501..155576246-chr3:155578051..155582871,10	K562	blood:
2	chr3:155581025..155583122-chr3:155605137..155607755,2	K562	blood:
3	chr3:155568463..155575692-chr3:155576220..155581983,14	K562	blood:
4	chr3:155581032..155584920-chr3:155585125..155590498,11	MCF-7	breast:
5	chr3:155579576..155584964-chr3:155586056..155589559,5	MCF-7	breast:
6	chr3:155579889..155584960-chr3:155586303..155591182,11	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GMPS-1	chr3:155580439-155581520	XLOC_002888
2	lnc-GMPS-1	chr3:155580437-155581489	NONHSAT092846

No data

Variant related genes	Relation type
ENSG00000169359	Chromatin interaction
ENSG00000163655	Chromatin interaction

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs10513485	0.80[EUR][1000 genomes]
rs10523298	0.87[ASN][1000 genomes]
rs12485698	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12485701	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12485735	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12485742	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12485802	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12486102	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12486189	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12486864	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12489430	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12490114	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12491178	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12492156	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12492258	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12493409	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12493654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12493764	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12493934	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12493963	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12494104	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12494143	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12494730	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12495418	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12496006	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12496097	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12496896	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12497735	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12497838	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12497968	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13088748	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1533443	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16825551	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16825554	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16825557	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16825602	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1878212	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2068601	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2292716	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34340793	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35247619	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3732399	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3772114	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3804769	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4108611	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41267913	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58648744	0.86[AFR][1000 genomes]
rs59255899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60041926	0.81[AFR][1000 genomes]
rs60422213	0.81[AFR][1000 genomes]
rs61750368	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61750369	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62284864	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62284869	0.80[EUR][1000 genomes]
rs62284871	0.80[EUR][1000 genomes]
rs62284872	0.80[EUR][1000 genomes]
rs62284876	0.80[EUR][1000 genomes]
rs62286780	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62286783	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62286784	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62286785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62286786	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62286788	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286792	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286793	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286794	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286795	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286796	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286797	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286799	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286800	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286801	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286804	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286806	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286833	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286834	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286835	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286836	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286837	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286838	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286839	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286840	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286841	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286842	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286843	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286844	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286845	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286846	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286847	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286849	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286850	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286851	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286852	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286853	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286854	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286858	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62286859	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62287760	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62287761	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62287762	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62287763	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62287800	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62287801	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62287803	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62287804	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62287805	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62287807	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62287808	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62287809	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62287811	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62287812	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62287813	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62287814	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62287819	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62287820	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62287821	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62287822	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62287823	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62287824	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62287825	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62287826	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62287827	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62287829	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62287855	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62287856	0.83[ASN][1000 genomes]
rs73873435	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73873437	0.90[AFR][1000 genomes]
rs73873440	0.81[AFR][1000 genomes]
rs968199	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9820541	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9826666	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155575800-155587400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:155579600-155581400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr3:155579800-155581400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr3:155580400-155581600	Flanking Active TSS	K562	blood
5	chr3:155580600-155587400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:155580800-155587600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:155581000-155587600	Weak transcription	Fetal Thymus	thymus
8	chr3:155581200-155581600	Enhancers	HepG2	liver
9	chr3:155581200-155587200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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