Variant report

Variant	rs62286794
Chromosome Location	chr3:155589963-155589964
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:155520264..155525290-chr3:155586627..155590296,8	K562	blood:
2	chr3:155461486..155465793-chr3:155586998..155592801,6	K562	blood:
3	chr3:155461523..155464397-chr3:155587900..155591398,5	MCF-7	breast:
4	chr3:155568718..155574348-chr3:155586235..155593210,15	K562	blood:
5	chr3:155461195..155464539-chr3:155588373..155590107,3	MCF-7	breast:
6	chr3:155520823..155524412-chr3:155585049..155590112,5	MCF-7	breast:
7	chr3:155546434..155549740-chr3:155588922..155591609,3	K562	blood:
8	chr3:155522036..155526613-chr3:155586597..155592084,8	K562	blood:
9	chr3:155570444..155573449-chr3:155586982..155591161,10	MCF-7	breast:
10	chr3:155508129..155511910-chr3:155589025..155592150,5	K562	blood:
11	chr3:155522507..155525053-chr3:155587874..155590161,2	MCF-7	breast:
12	chr20:52490662..52493657-chr3:155587949..155590436,2	MCF-7	breast:
13	chr3:155542984..155546032-chr3:155588634..155590406,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000241721	Chromatin interaction
ENSG00000114805	Chromatin interaction
ENSG00000169359	Chromatin interaction
ENSG00000174928	Chromatin interaction
ENSG00000214919	Chromatin interaction

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10513485	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10523298	0.84[ASN][1000 genomes]
rs12485698	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12485701	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12485735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12485742	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12485802	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12486102	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12486189	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12486864	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12487275	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12489430	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12490114	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12491178	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12492156	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12492258	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12493409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12493654	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12493764	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12493934	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12493963	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12494104	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12494143	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12494730	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12495418	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12496006	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12496097	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12496896	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12497735	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12497838	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12497968	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13088748	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1533443	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16825551	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16825554	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16825557	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16825602	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1878212	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2068601	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2292716	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34340793	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35247619	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3732399	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3772114	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3804769	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4108611	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41267913	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59255899	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61750368	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61750369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62284864	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62284869	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62284871	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62284872	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62284876	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62284877	0.80[AMR][1000 genomes]
rs62286780	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286783	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62286784	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286785	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286786	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286788	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62286792	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62286793	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62286795	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62286796	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62286797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62286799	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62286800	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62286801	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62286804	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62286806	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286833	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286834	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286835	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286836	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286837	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286838	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286839	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286840	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286841	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286842	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286843	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286844	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286845	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286846	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286847	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286849	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286850	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286851	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286852	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286853	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286854	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286858	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286859	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62287760	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62287761	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62287762	0.83[ASN][1000 genomes]
rs62287763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62287800	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62287801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62287803	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62287804	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62287805	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62287807	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62287808	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62287809	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62287811	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62287812	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62287813	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62287814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62287819	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62287820	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62287821	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62287822	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62287823	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62287824	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62287825	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62287826	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62287827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62287829	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62287855	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62287856	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73873435	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs968199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9820541	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9826666	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	esv3325134	chr3:155587683-155590231	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155587400-155590000	Active TSS	Aorta	Aorta
2	chr3:155587400-155590600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:155587400-155590600	Active TSS	HepG2	liver
4	chr3:155587400-155591000	Active TSS	H1 Cell Line	embryonic stem cell
5	chr3:155587600-155590000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:155587600-155590000	Active TSS	Placenta Amnion	Placenta Amnion
7	chr3:155587600-155590000	Active TSS	HSMM	muscle
8	chr3:155587600-155590200	Active TSS	H9 Cell Line	embryonic stem cell
9	chr3:155587600-155590200	Active TSS	Left Ventricle	heart
10	chr3:155587600-155590200	Active TSS	Right Atrium	heart
11	chr3:155587600-155590200	Active TSS	Right Ventricle	heart
12	chr3:155587600-155590200	Active TSS	A549	lung
13	chr3:155587600-155590400	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr3:155587600-155590400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:155587600-155590400	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr3:155587600-155590400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:155587600-155590800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:155587600-155591000	Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr3:155587800-155590000	Active TSS	Colon Smooth Muscle	Colon
20	chr3:155587800-155590000	Active TSS	Fetal Kidney	kidney
21	chr3:155587800-155590000	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr3:155587800-155590000	Active TSS	Gastric	stomach
23	chr3:155587800-155590000	Active TSS	Psoas Muscle	Psoas
24	chr3:155587800-155590000	Active TSS	Sigmoid Colon	Sigmoid Colon
25	chr3:155587800-155590000	Active TSS	Small Intestine	intestine
26	chr3:155587800-155590200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
27	chr3:155587800-155590200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr3:155587800-155590200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:155587800-155590200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr3:155587800-155590200	Active TSS	Ovary	ovary
31	chr3:155587800-155590600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr3:155588000-155590000	Active TSS	HUES48 Cell Line	embryonic stem cell
33	chr3:155588000-155590000	Active TSS	HUES64 Cell Line	embryonic stem cell
34	chr3:155588000-155590000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr3:155588000-155590000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
36	chr3:155588000-155590000	Active TSS	Primary T helper naive cells from peripheral blood	blood
37	chr3:155588000-155590000	Active TSS	Brain Hippocampus Middle	brain
38	chr3:155588000-155590000	Active TSS	Fetal Intestine Large	intestine
39	chr3:155588000-155590000	Active TSS	Fetal Intestine Small	intestine
40	chr3:155588000-155590000	Active TSS	Fetal Thymus	thymus
41	chr3:155588000-155590000	Active TSS	Stomach Mucosa	stomach
42	chr3:155588000-155590200	Active TSS	iPS-18 Cell Line	embryonic stem cell
43	chr3:155588000-155590200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr3:155588000-155590200	Active TSS	Thymus	Thymus
45	chr3:155588000-155590400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr3:155588000-155590400	Active TSS	Fetal Stomach	stomach
47	chr3:155588000-155590400	Active TSS	Stomach Smooth Muscle	stomach
48	chr3:155588000-155590400	Active TSS	HSMMtube	muscle
49	chr3:155588000-155590400	Active TSS	NHDF-Ad	bronchial
50	chr3:155588000-155590600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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