Variant report

Variant	rs9855091
Chromosome Location	chr3:155598578-155598579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13327285	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28616803	1.00[AMR][1000 genomes]
rs28655132	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28758371	1.00[AMR][1000 genomes]
rs6791517	1.00[AMR][1000 genomes]
rs73011105	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9819269	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9823047	0.83[AMR][1000 genomes]
rs9832621	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9862051	1.00[AMR][1000 genomes]
rs9863571	0.83[AMR][1000 genomes]
rs9868194	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155589600-155599600	Weak transcription	Spleen	Spleen
2	chr3:155589800-155607000	Weak transcription	Pancreas	Pancrea
3	chr3:155590000-155599400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:155590200-155599000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:155590200-155599400	Weak transcription	Right Ventricle	heart
6	chr3:155590200-155608400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:155590200-155643000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:155590200-155667400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:155590800-155607200	Weak transcription	Brain Angular Gyrus	brain
10	chr3:155591000-155599000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr3:155591000-155599200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:155591000-155599400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr3:155591000-155599400	Weak transcription	Colon Smooth Muscle	Colon
14	chr3:155591000-155599800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:155591000-155607200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:155591000-155611200	Weak transcription	Fetal Muscle Leg	muscle
17	chr3:155591000-155611800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr3:155591200-155607800	Weak transcription	Fetal Intestine Small	intestine
19	chr3:155591200-155612600	Weak transcription	Primary B cells from cord blood	blood
20	chr3:155591400-155602200	Weak transcription	Fetal Lung	lung
21	chr3:155591400-155606600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:155591400-155611200	Weak transcription	Fetal Thymus	thymus
23	chr3:155591400-155616200	Weak transcription	NHEK	skin
24	chr3:155592000-155611800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:155592200-155607000	Weak transcription	NHDF-Ad	bronchial
26	chr3:155592200-155607200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr3:155592600-155599400	Weak transcription	A549	lung
28	chr3:155592600-155608400	Weak transcription	Hela-S3	cervix
29	chr3:155593200-155599400	Weak transcription	Ovary	ovary
30	chr3:155593200-155607000	Weak transcription	Aorta	Aorta
31	chr3:155593200-155607000	Weak transcription	Psoas Muscle	Psoas
32	chr3:155593400-155607000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:155593400-155607000	Weak transcription	Gastric	stomach
34	chr3:155594200-155599400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr3:155594200-155599400	Weak transcription	Right Atrium	heart
36	chr3:155594200-155622000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr3:155594400-155599600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr3:155594400-155607200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr3:155594400-155607800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr3:155594600-155606600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr3:155594800-155599600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr3:155595400-155598800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr3:155595400-155600000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr3:155596600-155599400	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr3:155596800-155599600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr3:155596800-155611200	Weak transcription	Thymus	Thymus
47	chr3:155597200-155599400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr3:155597400-155599400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr3:155597400-155599400	Weak transcription	Left Ventricle	heart
50	chr3:155597400-155607000	Weak transcription	Lung	lung

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