Variant report

Variant	rs28758779
Chromosome Location	chr8:94915802-94915803
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:94913574..94917508-chr8:94928247..94930539,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264448	Chromatin interaction
ENSG00000164951	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs3115898	0.87[EUR][1000 genomes]
rs3115904	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3115905	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3115906	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3115907	0.87[EUR][1000 genomes]
rs3115908	0.87[EUR][1000 genomes]
rs3115909	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3115910	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3115912	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3133978	0.87[EUR][1000 genomes]
rs3133979	0.87[EUR][1000 genomes]
rs3133980	0.87[EUR][1000 genomes]
rs3133983	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3133984	0.87[EUR][1000 genomes]
rs34468383	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57919376	0.84[EUR][1000 genomes]
rs58328810	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58550934	0.91[EUR][1000 genomes]
rs58894594	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59390113	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62525235	0.91[EUR][1000 genomes]
rs62525237	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62525238	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62525240	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62525241	0.87[EUR][1000 genomes]
rs723039	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017969	chr8:94029461-94930730	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv2754970	chr8:94675324-94991724	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:94907000-94916200	Weak transcription	HMEC	breast
2	chr8:94907000-94916600	Weak transcription	NHLF	lung
3	chr8:94908600-94917200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:94909200-94918000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:94910200-94916200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr8:94911000-94916200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:94911000-94916600	Weak transcription	Fetal Lung	lung
8	chr8:94911200-94916200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:94911400-94916200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:94911400-94916200	Weak transcription	NHDF-Ad	bronchial
11	chr8:94911400-94916400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:94911400-94916400	Weak transcription	Aorta	Aorta
13	chr8:94911400-94916400	Weak transcription	Fetal Muscle Leg	muscle
14	chr8:94911400-94916400	Weak transcription	Osteobl	bone
15	chr8:94911600-94916400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr8:94911800-94916200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:94911800-94916200	Weak transcription	Fetal Intestine Small	intestine
18	chr8:94911800-94916400	Weak transcription	Fetal Intestine Large	intestine
19	chr8:94911800-94917200	Weak transcription	Left Ventricle	heart
20	chr8:94913800-94916400	Enhancers	Psoas Muscle	Psoas
21	chr8:94914000-94916000	Weak transcription	Primary B cells from cord blood	blood
22	chr8:94914200-94916400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr8:94914200-94916800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:94914400-94916200	Weak transcription	GM12878-XiMat	blood
25	chr8:94914400-94916400	Weak transcription	HSMM	muscle
26	chr8:94914400-94918800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr8:94914600-94916200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr8:94914600-94916400	Weak transcription	HSMMtube	muscle
29	chr8:94914600-94917000	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr8:94914600-94918000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr8:94914600-94928200	Weak transcription	Right Ventricle	heart
32	chr8:94914800-94918200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr8:94915000-94918800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr8:94915000-94918800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr8:94915200-94916200	Weak transcription	Ovary	ovary
36	chr8:94915400-94916600	Weak transcription	Fetal Kidney	kidney
37	chr8:94915600-94916000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr8:94915600-94918200	Enhancers	Hela-S3	cervix
39	chr8:94915600-94918600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr8:94915600-94918800	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr8:94915600-94918800	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr8:94915600-94918800	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr8:94915600-94919000	Enhancers	Primary B cells from peripheral blood	blood
44	chr8:94915600-94919200	Enhancers	NHEK	skin
45	chr8:94915800-94916400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr8:94915800-94916400	Enhancers	Primary T cells fromperipheralblood	blood
47	chr8:94915800-94916400	Weak transcription	Small Intestine	intestine
48	chr8:94915800-94917600	Enhancers	Fetal Stomach	stomach
49	chr8:94915800-94918600	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr8:94915800-94918800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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