Variant report

Variant	rs34468383
Chromosome Location	chr8:94917443-94917444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:94913574..94917508-chr8:94928247..94930539,4	MCF-7	breast:
2	chr8:94896023..94898427-chr8:94916824..94918846,2	MCF-7	breast:
3	chr8:94915938..94917469-chr8:94923641..94925645,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264448	Chromatin interaction
ENSG00000164951	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs28758779	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3115898	0.87[EUR][1000 genomes]
rs3115904	0.87[EUR][1000 genomes]
rs3115905	0.87[EUR][1000 genomes]
rs3115906	0.87[EUR][1000 genomes]
rs3115907	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3115908	0.87[EUR][1000 genomes]
rs3115909	0.87[EUR][1000 genomes]
rs3115910	0.87[EUR][1000 genomes]
rs3115912	0.87[EUR][1000 genomes]
rs3133978	0.87[EUR][1000 genomes]
rs3133979	0.87[EUR][1000 genomes]
rs3133980	0.87[EUR][1000 genomes]
rs3133983	0.86[EUR][1000 genomes]
rs3133984	0.87[EUR][1000 genomes]
rs57919376	0.84[EUR][1000 genomes]
rs58328810	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58550934	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58894594	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59390113	0.87[EUR][1000 genomes]
rs62525235	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62525237	0.87[EUR][1000 genomes]
rs62525238	0.87[EUR][1000 genomes]
rs62525240	0.87[EUR][1000 genomes]
rs62525241	0.87[EUR][1000 genomes]
rs723039	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017969	chr8:94029461-94930730	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv2754970	chr8:94675324-94991724	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:94909200-94918000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr8:94914400-94918800	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr8:94914600-94918000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:94914600-94928200	Weak transcription	Right Ventricle	heart
5	chr8:94914800-94918200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr8:94915000-94918800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr8:94915000-94918800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:94915600-94918200	Enhancers	Hela-S3	cervix
9	chr8:94915600-94918600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr8:94915600-94918800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr8:94915600-94918800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr8:94915600-94918800	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr8:94915600-94919000	Enhancers	Primary B cells from peripheral blood	blood
14	chr8:94915600-94919200	Enhancers	NHEK	skin
15	chr8:94915800-94917600	Enhancers	Fetal Stomach	stomach
16	chr8:94915800-94918600	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr8:94915800-94918800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr8:94915800-94918800	Enhancers	HUVEC	blood vessel
19	chr8:94915800-94918800	Enhancers	NH-A	brain
20	chr8:94915800-94919000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr8:94916000-94918800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:94916000-94919600	Enhancers	Primary B cells from cord blood	blood
23	chr8:94916200-94917600	Enhancers	Fetal Intestine Small	intestine
24	chr8:94916200-94918600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr8:94916200-94918600	Enhancers	GM12878-XiMat	blood
26	chr8:94916200-94918800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:94916200-94918800	Enhancers	HMEC	breast
28	chr8:94916200-94919200	Enhancers	Muscle Satellite Cultured Cells	--
29	chr8:94916200-94919400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr8:94916200-94919600	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr8:94916400-94917600	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr8:94916400-94917600	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr8:94916400-94917600	Weak transcription	Spleen	Spleen
34	chr8:94916400-94917800	Weak transcription	Psoas Muscle	Psoas
35	chr8:94916400-94918800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr8:94916400-94918800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr8:94916400-94918800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr8:94916400-94918800	Enhancers	Osteobl	bone
39	chr8:94916600-94917600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr8:94916600-94917800	Weak transcription	Ovary	ovary
41	chr8:94916600-94917800	Weak transcription	Stomach Mucosa	stomach
42	chr8:94916600-94928000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr8:94916800-94917600	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr8:94916800-94918000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr8:94916800-94918000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr8:94916800-94918600	Enhancers	NHDF-Ad	bronchial
47	chr8:94916800-94918800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr8:94916800-94918800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr8:94917000-94917600	Weak transcription	Small Intestine	intestine
50	chr8:94917000-94917600	Weak transcription	HSMM	muscle

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