Variant report

Variant	rs62525235
Chromosome Location	chr8:94926894-94926895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:94926736-94927255	HCT-116	colon:	n/a	n/a
2	POLR2A	chr8:94926729-94938557	HCT-116	colon:	n/a	n/a
3	MAX	chr8:94926725-94931563	HCT-116	colon:	n/a	chr8:94929050-94929060 chr8:94929183-94929193 chr8:94929262-94929272 chr8:94928917-94928927 chr8:94928931-94928940
4	FOS	chr8:94926870-94927065	MCF10A-Er-Src	breast:	n/a	n/a
5	STAT3	chr8:94926872-94926994	MCF10A-Er-Src	breast:	n/a	n/a
6	SIN3AK20	chr8:94926741-94932616	HCT-116	colon:	n/a	n/a
7	FOS	chr8:94926872-94926922	MCF10A-Er-Src	breast:	n/a	n/a
8	SIN3AK20	chr8:94926740-94931269	HCT-116	colon:	n/a	n/a

Variant related genes	Relation type
PDP1	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs28758779	0.91[EUR][1000 genomes]
rs3115898	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3115904	0.96[EUR][1000 genomes]
rs3115905	0.96[EUR][1000 genomes]
rs3115906	0.96[EUR][1000 genomes]
rs3115907	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3115908	0.96[EUR][1000 genomes]
rs3115909	0.96[EUR][1000 genomes]
rs3115910	0.96[EUR][1000 genomes]
rs3115912	0.96[EUR][1000 genomes]
rs3133978	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3133979	0.96[EUR][1000 genomes]
rs3133980	0.96[EUR][1000 genomes]
rs3133983	0.94[EUR][1000 genomes]
rs3133984	0.96[EUR][1000 genomes]
rs34468383	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57919376	0.92[EUR][1000 genomes]
rs58328810	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58550934	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58894594	0.87[EUR][1000 genomes]
rs59390113	0.96[EUR][1000 genomes]
rs62525237	0.96[EUR][1000 genomes]
rs62525238	0.96[EUR][1000 genomes]
rs62525240	0.96[EUR][1000 genomes]
rs62525241	0.96[EUR][1000 genomes]
rs723039	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017969	chr8:94029461-94930730	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv2754970	chr8:94675324-94991724	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:94914600-94928200	Weak transcription	Right Ventricle	heart
2	chr8:94916600-94928000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:94919400-94928000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:94919800-94928400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:94922000-94927600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:94924800-94928200	Enhancers	Fetal Heart	heart
7	chr8:94925600-94927800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr8:94925600-94927800	Weak transcription	HSMMtube	muscle
9	chr8:94925800-94927000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:94925800-94927400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:94925800-94927600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:94926000-94927000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr8:94926000-94927400	Weak transcription	NHEK	skin
14	chr8:94926000-94927800	Weak transcription	HMEC	breast
15	chr8:94926000-94928200	Weak transcription	Psoas Muscle	Psoas
16	chr8:94926000-94928400	Weak transcription	Lung	lung
17	chr8:94926600-94927800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr8:94926600-94928000	Enhancers	Fetal Muscle Leg	muscle
19	chr8:94926600-94928000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr8:94926800-94927000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr8:94926800-94927200	Enhancers	Left Ventricle	heart

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