Variant report

Variant	rs28758970
Chromosome Location	chr3:100276438-100276439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100273925..100276439-chr3:100276938..100279172,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1144120	1.00[EUR][1000 genomes]
rs1144123	1.00[EUR][1000 genomes]
rs1145339	1.00[EUR][1000 genomes]
rs1145340	1.00[EUR][1000 genomes]
rs1145342	1.00[EUR][1000 genomes]
rs1145343	1.00[EUR][1000 genomes]
rs1145347	1.00[EUR][1000 genomes]
rs1145350	1.00[EUR][1000 genomes]
rs1165259	1.00[EUR][1000 genomes]
rs1676341	1.00[EUR][1000 genomes]
rs1718286	1.00[EUR][1000 genomes]
rs1718288	1.00[EUR][1000 genomes]
rs2449251	1.00[EUR][1000 genomes]
rs28613482	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56352726	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58029125	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58211782	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6441368	1.00[EUR][1000 genomes]
rs6771774	1.00[EUR][1000 genomes]
rs9844035	1.00[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100241000-100299800	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:100253800-100289000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:100253800-100289000	Weak transcription	Aorta	Aorta
4	chr3:100261800-100277000	Weak transcription	Fetal Lung	lung
5	chr3:100265800-100300600	Weak transcription	HepG2	liver
6	chr3:100268400-100282200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:100268600-100277400	Weak transcription	Fetal Stomach	stomach
8	chr3:100270800-100291000	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:100272400-100277400	Enhancers	Hela-S3	cervix
10	chr3:100273400-100288600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:100273400-100297000	Weak transcription	Pancreas	Pancrea
12	chr3:100274800-100277800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:100274800-100279600	Weak transcription	Liver	Liver
14	chr3:100275000-100277000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr3:100275000-100277000	Strong transcription	Placenta Amnion	Placenta Amnion
16	chr3:100275000-100278200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:100275200-100276800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:100275200-100276800	Enhancers	HSMM	muscle
19	chr3:100275200-100277000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:100275200-100277000	Enhancers	HMEC	breast
21	chr3:100275200-100277000	Enhancers	NHDF-Ad	bronchial
22	chr3:100275200-100277000	Enhancers	NHEK	skin
23	chr3:100275400-100276800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:100275400-100276800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:100275400-100276800	Enhancers	Osteobl	bone
26	chr3:100275400-100277000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:100275400-100277000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:100275600-100278000	Enhancers	NHLF	lung
29	chr3:100276000-100280200	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr3:100276000-100282600	Weak transcription	HSMMtube	muscle
31	chr3:100276200-100280000	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr3:100276200-100280000	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr3:100276400-100276600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr3:100276400-100276600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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