Variant report

Variant	rs58029125
Chromosome Location	chr3:100267816-100267817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100260993..100262785-chr3:100265317..100268277,2	K562	blood:
2	chr3:100267261..100269678-chr3:100279015..100280671,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1144120	1.00[EUR][1000 genomes]
rs1144123	1.00[EUR][1000 genomes]
rs1145339	1.00[EUR][1000 genomes]
rs1145340	1.00[EUR][1000 genomes]
rs1145342	1.00[EUR][1000 genomes]
rs1145343	1.00[EUR][1000 genomes]
rs1145347	1.00[EUR][1000 genomes]
rs1145350	1.00[EUR][1000 genomes]
rs1165259	1.00[EUR][1000 genomes]
rs1676341	1.00[EUR][1000 genomes]
rs1718286	1.00[EUR][1000 genomes]
rs1718288	1.00[EUR][1000 genomes]
rs2449251	1.00[EUR][1000 genomes]
rs28613482	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28758970	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56352726	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58211782	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6441368	1.00[EUR][1000 genomes]
rs6771774	1.00[EUR][1000 genomes]
rs9844035	1.00[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100241000-100299800	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:100242400-100268000	Weak transcription	Ovary	ovary
3	chr3:100253800-100289000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:100253800-100289000	Weak transcription	Aorta	Aorta
5	chr3:100254000-100269400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:100255000-100274800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:100256800-100268200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:100261800-100277000	Weak transcription	Fetal Lung	lung
9	chr3:100265800-100269400	Weak transcription	Hela-S3	cervix
10	chr3:100265800-100271800	Weak transcription	Liver	Liver
11	chr3:100265800-100300600	Weak transcription	HepG2	liver
12	chr3:100266000-100270000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:100266400-100270600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:100266600-100268000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:100266600-100268600	Enhancers	HMEC	breast
16	chr3:100267000-100268400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:100267200-100275200	Weak transcription	HSMM	muscle
18	chr3:100267600-100268200	Weak transcription	Fetal Stomach	stomach
19	chr3:100267600-100269000	Weak transcription	NHDF-Ad	bronchial
20	chr3:100267600-100269200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:100267600-100275400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:100267800-100269400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:100267800-100269400	Weak transcription	NHEK	skin
24	chr3:100267800-100275000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr3:100267800-100275800	Weak transcription	HSMMtube	muscle

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