Variant report

Variant	rs56352726
Chromosome Location	chr3:100254804-100254805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100241152..100243622-chr3:100252905..100255777,2	MCF-7	breast:
2	chr3:100053176..100055387-chr3:100252864..100255166,2	K562	blood:

Variant related genes	Relation type
ENSG00000114021	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1144120	1.00[EUR][1000 genomes]
rs1144123	1.00[EUR][1000 genomes]
rs1145339	1.00[EUR][1000 genomes]
rs1145340	1.00[EUR][1000 genomes]
rs1145342	1.00[EUR][1000 genomes]
rs1145343	1.00[EUR][1000 genomes]
rs1145347	1.00[EUR][1000 genomes]
rs1145350	1.00[EUR][1000 genomes]
rs1165259	1.00[EUR][1000 genomes]
rs1676341	1.00[EUR][1000 genomes]
rs1718286	1.00[EUR][1000 genomes]
rs1718288	1.00[EUR][1000 genomes]
rs2449251	1.00[EUR][1000 genomes]
rs28613482	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28758970	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58029125	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58211782	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6441368	1.00[EUR][1000 genomes]
rs6771774	1.00[EUR][1000 genomes]
rs9844035	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100238000-100265400	Weak transcription	HSMMtube	muscle
2	chr3:100241000-100299800	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:100242400-100265000	Weak transcription	HepG2	liver
4	chr3:100242400-100268000	Weak transcription	Ovary	ovary
5	chr3:100244600-100261400	Weak transcription	Fetal Lung	lung
6	chr3:100244800-100255400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:100244800-100257800	Weak transcription	Spleen	Spleen
8	chr3:100244800-100267000	Weak transcription	HSMM	muscle
9	chr3:100245400-100255800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:100250800-100255200	Enhancers	NHDF-Ad	bronchial
11	chr3:100251000-100257400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:100251400-100255000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:100251400-100255600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:100251800-100257000	Enhancers	Hela-S3	cervix
15	chr3:100253200-100255200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr3:100253200-100256200	Enhancers	Liver	Liver
17	chr3:100253200-100257400	Enhancers	HMEC	breast
18	chr3:100253600-100255200	Enhancers	Adipose Nuclei	Adipose
19	chr3:100253800-100255000	Weak transcription	Pancreas	Pancrea
20	chr3:100253800-100289000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:100253800-100289000	Weak transcription	Aorta	Aorta
22	chr3:100254000-100255800	Weak transcription	Fetal Stomach	stomach
23	chr3:100254000-100269400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:100254200-100257400	Enhancers	Placenta Amnion	Placenta Amnion
25	chr3:100254400-100255400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr3:100254600-100255200	Enhancers	Osteobl	bone
27	chr3:100254600-100255400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:100254600-100255600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:100254600-100255800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:100254600-100255800	Enhancers	NHEK	skin
31	chr3:100254800-100255000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr3:100254800-100255200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr3:100254800-100255400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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