Variant report

Variant	rs2876412
Chromosome Location	chr20:15736261-15736262
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11696970	0.82[CEU][hapmap]
rs11697060	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs12479949	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs12480165	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs12480573	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs12481600	0.91[ASN][1000 genomes]
rs12481609	1.00[CHB][hapmap];0.83[JPT][hapmap];0.94[ASN][1000 genomes]
rs17625810	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs17625977	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17704466	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17704514	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2235762	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2235763	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55889651	0.94[ASN][1000 genomes]
rs55930983	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56344260	0.94[ASN][1000 genomes]
rs56404015	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57012898	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59003576	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6034279	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6034280	0.83[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap]
rs6034281	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs6043508	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[ASN][1000 genomes]
rs6043518	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap]
rs60774277	0.94[ASN][1000 genomes]
rs62194110	0.94[ASN][1000 genomes]
rs62194669	0.94[ASN][1000 genomes]
rs62194674	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62194675	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62194676	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62194678	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62194686	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73107333	0.91[ASN][1000 genomes]
rs73107335	0.94[ASN][1000 genomes]
rs8120971	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv912791	chr20:15702037-15759361	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv912792	chr20:15724399-15749292	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15735600-15737600	Enhancers	Fetal Brain Male	brain
2	chr20:15735800-15737200	Enhancers	Brain Germinal Matrix	brain
3	chr20:15736000-15736600	Enhancers	Brain Hippocampus Middle	brain
4	chr20:15736200-15736600	Enhancers	Brain Inferior Temporal Lobe	brain

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