Variant report

Variant	rs59003576
Chromosome Location	chr20:15721596-15721597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11697060	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12481600	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12481609	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17625810	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17625977	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17704466	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2235762	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2235763	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2876412	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55889651	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs55930983	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56344260	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56404015	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57012898	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6043508	0.91[ASN][1000 genomes]
rs60774277	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62194110	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62194669	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62194674	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62194675	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62194676	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62194678	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62194686	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73107333	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73107335	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv912791	chr20:15702037-15759361	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15719800-15721600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:15720000-15721600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr20:15720400-15722000	Enhancers	HMEC	breast
4	chr20:15720600-15721600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr20:15720600-15721600	Enhancers	NHEK	skin
6	chr20:15720800-15723200	Weak transcription	Hela-S3	cervix
7	chr20:15721000-15721600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr20:15721200-15723600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr20:15721200-15724200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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