Variant report
Variant | rs62194676 |
---|---|
Chromosome Location | chr20:15729511-15729512 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr20:15725311..15727779-chr20:15728429..15730816,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11697060 | 0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs12481600 | 0.86[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs12481609 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs17625810 | 0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs17625977 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17704466 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2235762 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2235763 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2876412 | 0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs55889651 | 0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs55930983 | 0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56344260 | 0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs56404015 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs57012898 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs59003576 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6043508 | 0.94[ASN][1000 genomes] |
rs60774277 | 0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs62194110 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs62194669 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs62194674 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62194675 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62194678 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62194686 | 0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs73107333 | 0.86[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs73107335 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv833928 | chr20:15619962-15780758 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv912791 | chr20:15702037-15759361 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv912792 | chr20:15724399-15749292 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15723400-15729800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr20:15723800-15731000 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |