Variant report

Variant	rs28768080
Chromosome Location	chr1:212035926-212035927
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10863929	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11119807	0.81[ASN][1000 genomes]
rs11119813	0.89[ASN][1000 genomes]
rs11487823	0.89[ASN][1000 genomes]
rs12059988	0.86[ASN][1000 genomes]
rs12076991	0.89[ASN][1000 genomes]
rs12077561	0.89[ASN][1000 genomes]
rs12084756	0.81[ASN][1000 genomes]
rs12085235	0.84[ASN][1000 genomes]
rs12085288	0.84[ASN][1000 genomes]
rs12088743	0.81[ASN][1000 genomes]
rs12090490	0.89[ASN][1000 genomes]
rs12095938	0.81[ASN][1000 genomes]
rs12410970	0.81[ASN][1000 genomes]
rs28800280	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28862981	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3738197	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3862952	0.81[ASN][1000 genomes]
rs4447046	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4466708	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4537651	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4562685	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4623773	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56132364	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61828259	0.81[ASN][1000 genomes]
rs61828491	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61828492	0.83[ASN][1000 genomes]
rs61828510	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6540709	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6662067	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6664082	0.81[ASN][1000 genomes]
rs6678582	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6684049	0.81[ASN][1000 genomes]
rs6704043	0.81[ASN][1000 genomes]
rs7518896	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7524009	0.81[ASN][1000 genomes]
rs7534335	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs28768080	INTS7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212035800-212036000	Weak transcription	Primary T cells from cord blood	blood
2	chr1:212035800-212036000	Flanking Active TSS	HSMMtube	muscle

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