The 2.0 version of rSNPBase

Variant report

Variant rs6540709
Chromosome Location chr1:211990542-211990543
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:211915800-211991800 Weak transcription Muscle Satellite Cultured Cells --
2 chr1:211916800-211994200 Weak transcription Fetal Brain Male brain
3 chr1:211919200-212001200 Weak transcription Gastric stomach
4 chr1:211923000-211991800 Weak transcription HSMM muscle
5 chr1:211924000-212002400 Weak transcription NHLF lung
6 chr1:211938200-211999400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr1:211939600-211992600 Weak transcription Esophagus oesophagus
8 chr1:211939800-212002400 Weak transcription HSMMtube muscle
9 chr1:211940000-212000600 Weak transcription Rectal Smooth Muscle rectum
10 chr1:211947400-212002400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr1:211951400-211992600 Weak transcription Ovary ovary
12 chr1:211952200-212003000 Weak transcription Placenta Amnion Placenta Amnion
13 chr1:211957600-211998800 Weak transcription NHDF-Ad bronchial
14 chr1:211957600-212000800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
15 chr1:211961200-212002200 Weak transcription Primary T helper cells PMA-I stimulated --
16 chr1:211965800-211992600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr1:211965800-212002200 Weak transcription Primary T cells from cord blood blood
18 chr1:211966400-211997400 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr1:211966400-212002400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr1:211966600-211992600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr1:211966600-211997400 Weak transcription Spleen Spleen
22 chr1:211967000-211998800 Weak transcription Osteobl bone
23 chr1:211970800-211990600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
24 chr1:211971800-212002400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
25 chr1:211974000-212001200 Weak transcription Small Intestine intestine
26 chr1:211975200-211992000 Weak transcription Primary T cells fromperipheralblood blood
27 chr1:211976800-211991400 Weak transcription Dnd41 blood
28 chr1:211976800-211997000 Weak transcription Fetal Kidney kidney
29 chr1:211979400-212000600 Weak transcription Aorta Aorta
30 chr1:211981200-211997200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
31 chr1:211982600-211992400 Weak transcription Fetal Stomach stomach
32 chr1:211983000-212002400 Weak transcription HUES6 Cell Line embryonic stem cell
33 chr1:211983200-212002400 Weak transcription Thymus Thymus
34 chr1:211984600-212002400 Weak transcription NH-A brain
35 chr1:211984800-212002000 Weak transcription HUVEC blood vessel
36 chr1:211984800-212002400 Weak transcription Primary T helper naive cells fromperipheralblood blood
37 chr1:211985000-211990600 Genic enhancers Primary B cells from cord blood blood
38 chr1:211985000-211991800 Weak transcription Duodenum Mucosa Duodenum
39 chr1:211985600-211991600 Weak transcription Rectal Mucosa Donor 31 rectum
40 chr1:211986200-211991600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr1:211986200-211992600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr1:211986200-211992600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr1:211986200-212000600 Weak transcription HepG2 liver
44 chr1:211986200-212000800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
45 chr1:211986200-212001000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
46 chr1:211986200-212001000 Weak transcription Primary T helper cells fromperipheralblood blood
47 chr1:211986200-212001000 Weak transcription Skeletal Muscle Male skeletal muscle
48 chr1:211986200-212002400 Weak transcription Rectal Mucosa Donor 29 rectum
49 chr1:211986200-212002800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
50 chr1:211986400-211992200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015