The 2.0 version of rSNPBase

Variant report

Variant rs61828246
Chromosome Location chr1:211908260-211908261
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:211879200-211913600 Weak transcription Right Atrium heart
2 chr1:211896400-211909000 Weak transcription Fetal Intestine Small intestine
3 chr1:211900200-211908400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr1:211903800-211908600 Weak transcription Lung lung
5 chr1:211904600-211912600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
6 chr1:211904600-211913800 Enhancers Brain Inferior Temporal Lobe brain
7 chr1:211904800-211913400 Enhancers Brain Substantia Nigra brain
8 chr1:211905000-211908400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr1:211905400-211908400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr1:211905400-211910600 Weak transcription Primary neutrophils fromperipheralblood blood
11 chr1:211905400-211910800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr1:211905600-211908600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr1:211905600-211910400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
14 chr1:211905800-211910400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr1:211906000-211908400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
16 chr1:211906400-211908600 Weak transcription HSMMtube muscle
17 chr1:211906800-211909200 Enhancers Brain Hippocampus Middle brain
18 chr1:211906800-211912400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
19 chr1:211907000-211920800 Weak transcription Aorta Aorta
20 chr1:211907200-211909200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr1:211907200-211909800 Enhancers Stomach Mucosa stomach
22 chr1:211907600-211908800 Enhancers Rectal Mucosa Donor 31 rectum
23 chr1:211907600-211909000 Enhancers Brain Cingulate Gyrus brain
24 chr1:211907600-211909200 Flanking Active TSS A549 lung
25 chr1:211907600-211909200 Bivalent Enhancer HepG2 liver
26 chr1:211907600-211909400 Enhancers Pancreas Pancrea
27 chr1:211907600-211909800 Enhancers K562 blood
28 chr1:211907800-211908600 Enhancers Hela-S3 cervix
29 chr1:211907800-211908600 Enhancers NHEK skin
30 chr1:211907800-211910800 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr1:211907800-211910800 Enhancers Fetal Adrenal Gland Adrenal Gland
32 chr1:211907800-211914400 Enhancers Brain Anterior Caudate brain
33 chr1:211908000-211908400 Active TSS Pancreatic Islets Pancreatic Islet
34 chr1:211908000-211913200 Enhancers Brain Angular Gyrus brain
35 chr1:211908200-211908400 Weak transcription Rectal Mucosa Donor 29 rectum
36 chr1:211908200-211908600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr1:211908200-211909600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
38 chr1:211908200-211910000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr1:211908200-211911200 Enhancers Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015