Variant report

Variant	rs2877686
Chromosome Location	chr14:25409677-25409678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10483291	0.85[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11159000	0.87[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs11159001	0.85[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs12586327	0.85[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs12586425	0.85[CEU][hapmap]
rs12587035	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17185425	0.87[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs1951800	1.00[CEU][hapmap]
rs2332459	0.80[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4561376	0.85[CEU][hapmap]
rs7141066	1.00[CEU][hapmap];0.85[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs7155229	0.87[CEU][hapmap]
rs74040740	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8003472	1.00[CEU][hapmap]
rs912306	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs912307	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9671261	0.87[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901508	chr14:25365505-25451903	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1041051	chr14:25388230-25480511	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1047792	chr14:25388933-25503799	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25394800-25410400	Weak transcription	Fetal Muscle Leg	muscle
2	chr14:25395400-25410400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr14:25396600-25415800	Weak transcription	Fetal Brain Male	brain
4	chr14:25399000-25410600	Weak transcription	Fetal Intestine Small	intestine
5	chr14:25399400-25413800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr14:25399800-25413400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:25399800-25413600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr14:25403800-25411400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:25403800-25411800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr14:25404600-25411800	Weak transcription	Brain Angular Gyrus	brain
11	chr14:25405200-25411800	Weak transcription	Brain Hippocampus Middle	brain
12	chr14:25405200-25411800	Weak transcription	Colon Smooth Muscle	Colon
13	chr14:25405400-25411800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr14:25405600-25409800	Weak transcription	Pancreas	Pancrea
15	chr14:25405600-25410800	Weak transcription	HepG2	liver
16	chr14:25405600-25412400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr14:25406400-25412200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr14:25407400-25413200	Weak transcription	Brain Anterior Caudate	brain
19	chr14:25408200-25410000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr14:25408200-25410400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr14:25408200-25410800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr14:25408200-25411800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr14:25408400-25412200	Weak transcription	HSMM	muscle
24	chr14:25408400-25412400	Enhancers	Fetal Heart	heart
25	chr14:25408600-25411800	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr14:25408600-25412000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr14:25408800-25410600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr14:25409000-25412400	Enhancers	GM12878-XiMat	blood
29	chr14:25409200-25409800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:25409200-25410800	Enhancers	Right Ventricle	heart
31	chr14:25409400-25409800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr14:25409400-25409800	Enhancers	Fetal Lung	lung
33	chr14:25409400-25409800	Weak transcription	Left Ventricle	heart
34	chr14:25409600-25409800	Enhancers	NHDF-Ad	bronchial

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