Variant report

Variant	rs7155229
Chromosome Location	chr14:25391274-25391275
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:25390168..25392305-chr14:25400560..25403132,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10483291	1.00[CEU][hapmap]
rs11159000	1.00[CEU][hapmap]
rs11159001	1.00[CEU][hapmap]
rs11847012	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1241598	0.93[CHB][hapmap]
rs12586327	1.00[CEU][hapmap]
rs12586425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12588743	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12880456	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12880978	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12883258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12885474	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12886704	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12887754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12889054	0.96[ASN][1000 genomes]
rs12891857	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12893418	0.98[ASN][1000 genomes]
rs12896576	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17185369	0.93[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs17185376	0.93[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs17185397	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17185425	1.00[CEU][hapmap]
rs17257556	0.93[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs17257577	0.98[ASN][1000 genomes]
rs1951800	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2332459	0.85[CEU][hapmap]
rs2877686	0.87[CEU][hapmap]
rs4561376	1.00[CEU][hapmap]
rs58423583	0.98[ASN][1000 genomes]
rs7141066	0.85[CEU][hapmap]
rs7154597	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs74040723	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74040727	0.92[AFR][1000 genomes]
rs8003472	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs912306	0.87[CEU][hapmap]
rs912307	0.87[CEU][hapmap]
rs9671261	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901508	chr14:25365505-25451903	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1041051	chr14:25388230-25480511	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1047792	chr14:25388933-25503799	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25379400-25397800	Weak transcription	Right Ventricle	heart
2	chr14:25381400-25397800	Weak transcription	Fetal Intestine Small	intestine
3	chr14:25386400-25392600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr14:25386400-25393000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr14:25387600-25391800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr14:25387800-25392000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:25388200-25393800	Weak transcription	Brain Substantia Nigra	brain
8	chr14:25388400-25392800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr14:25388400-25395000	Weak transcription	Brain Anterior Caudate	brain
10	chr14:25388600-25393800	Weak transcription	Brain Angular Gyrus	brain
11	chr14:25388600-25393800	Weak transcription	Brain Hippocampus Middle	brain
12	chr14:25389000-25395000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr14:25389400-25392800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr14:25389400-25392800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr14:25390200-25391800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr14:25390200-25392200	Enhancers	Fetal Heart	heart
17	chr14:25390200-25394400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr14:25390200-25394600	Weak transcription	Left Ventricle	heart
19	chr14:25390200-25395200	Weak transcription	HepG2	liver
20	chr14:25390200-25396400	Weak transcription	Fetal Lung	lung
21	chr14:25390200-25405200	Weak transcription	Pancreas	Pancrea
22	chr14:25390600-25391800	Enhancers	HSMM	muscle
23	chr14:25390600-25396600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr14:25390800-25392000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr14:25391000-25391400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:25391000-25391400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr14:25391000-25391400	Flanking Active TSS	HSMMtube	muscle
28	chr14:25391000-25391600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr14:25391000-25391600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:25391000-25391600	Enhancers	NHEK	skin
31	chr14:25391000-25391800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr14:25391000-25392000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr14:25391000-25392000	Enhancers	NH-A	brain
34	chr14:25391200-25391400	Enhancers	Muscle Satellite Cultured Cells	--
35	chr14:25391200-25391600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr14:25391200-25391800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr14:25391200-25391800	Enhancers	NHDF-Ad	bronchial

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