Variant report

Variant	rs8003472
Chromosome Location	chr14:25399365-25399366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10483291	0.85[CEU][hapmap]
rs11159000	0.85[CEU][hapmap]
rs11159001	0.85[CEU][hapmap];0.80[GIH][hapmap]
rs11847012	1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1241598	0.93[CHB][hapmap]
rs12586327	0.85[CEU][hapmap]
rs12586425	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12588743	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1270756	0.86[ASW][hapmap]
rs12880456	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12880978	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12883258	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12885474	1.00[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12886704	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12887754	1.00[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12889054	0.98[ASN][1000 genomes]
rs12891857	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12893418	1.00[ASN][1000 genomes]
rs12896576	1.00[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17185369	0.93[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs17185376	0.93[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs17185397	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17185425	0.85[CEU][hapmap]
rs17257556	0.93[CHB][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs17257577	1.00[ASN][1000 genomes]
rs1951800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038699	0.86[EUR][1000 genomes]
rs2877686	1.00[CEU][hapmap]
rs4561376	0.85[CEU][hapmap];0.88[GIH][hapmap]
rs58423583	1.00[ASN][1000 genomes]
rs59153576	0.87[EUR][1000 genomes]
rs7141066	1.00[CEU][hapmap];0.88[GIH][hapmap];0.92[MKK][hapmap];0.86[EUR][1000 genomes]
rs7154597	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7155229	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74040723	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74040727	0.82[AFR][1000 genomes]
rs912306	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs912307	1.00[CEU][hapmap]
rs9671261	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901508	chr14:25365505-25451903	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1041051	chr14:25388230-25480511	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1047792	chr14:25388933-25503799	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25390200-25405200	Weak transcription	Pancreas	Pancrea
2	chr14:25391800-25403600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:25394600-25399400	Enhancers	Brain Angular Gyrus	brain
4	chr14:25394800-25410400	Weak transcription	Fetal Muscle Leg	muscle
5	chr14:25395400-25410400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr14:25395600-25399400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr14:25396600-25399400	Enhancers	Brain Substantia Nigra	brain
8	chr14:25396600-25409200	Weak transcription	Left Ventricle	heart
9	chr14:25396600-25415800	Weak transcription	Fetal Brain Male	brain
10	chr14:25397600-25399400	Enhancers	Brain Anterior Caudate	brain
11	chr14:25397600-25399400	Enhancers	Brain Hippocampus Middle	brain
12	chr14:25397800-25399800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:25397800-25403600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:25397800-25403600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr14:25398000-25399400	Enhancers	Brain Cingulate Gyrus	brain
16	chr14:25398000-25400800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:25398000-25407800	Weak transcription	HSMMtube	muscle
18	chr14:25398200-25403600	Weak transcription	Colon Smooth Muscle	Colon
19	chr14:25398200-25409400	Weak transcription	Fetal Lung	lung
20	chr14:25398400-25399800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr14:25398400-25399800	Enhancers	Fetal Heart	heart
22	chr14:25398400-25408600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr14:25398600-25405000	Weak transcription	HepG2	liver
24	chr14:25399000-25400600	Weak transcription	Small Intestine	intestine
25	chr14:25399000-25410600	Weak transcription	Fetal Intestine Small	intestine
26	chr14:25399200-25405200	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links