Variant report

Variant	rs58423583
Chromosome Location	chr14:25386027-25386028
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11847012	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12586425	1.00[ASN][1000 genomes]
rs12588743	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12880456	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12880978	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12883258	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12885474	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12886704	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12887754	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12889054	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12891857	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12893418	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12896576	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17185369	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17185376	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17185397	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17257556	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17257577	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1951800	1.00[ASN][1000 genomes]
rs7154597	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7155229	0.98[ASN][1000 genomes]
rs74040723	0.97[ASN][1000 genomes]
rs8003472	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1041445	chr14:25326692-25388290	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv901508	chr14:25365505-25451903	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25379400-25397800	Weak transcription	Right Ventricle	heart
2	chr14:25381000-25389800	Weak transcription	Left Ventricle	heart
3	chr14:25381200-25387800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:25381200-25388200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:25381200-25389800	Weak transcription	Pancreas	Pancrea
6	chr14:25381400-25397800	Weak transcription	Fetal Intestine Small	intestine
7	chr14:25382200-25388200	Enhancers	Brain Substantia Nigra	brain
8	chr14:25383400-25386200	Weak transcription	Fetal Heart	heart
9	chr14:25384000-25386400	Enhancers	HepG2	liver
10	chr14:25384200-25387600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr14:25384600-25387800	Weak transcription	Brain Angular Gyrus	brain
12	chr14:25384800-25386200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr14:25384800-25388000	Weak transcription	Brain Anterior Caudate	brain
14	chr14:25385000-25387800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr14:25385200-25386400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr14:25385200-25388000	Weak transcription	Brain Hippocampus Middle	brain
17	chr14:25385400-25386600	Enhancers	Stomach Mucosa	stomach
18	chr14:25385400-25386800	Enhancers	Fetal Lung	lung
19	chr14:25385600-25386400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr14:25385600-25386600	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr14:25385800-25386200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr14:25385800-25386200	Enhancers	HSMMtube	muscle
23	chr14:25385800-25386400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr14:25385800-25391000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr14:25386000-25386200	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr14:25386000-25386400	Enhancers	H9 Cell Line	embryonic stem cell
27	chr14:25386000-25386600	Enhancers	Brain Cingulate Gyrus	brain
28	chr14:25386000-25387800	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr14:25386000-25388000	Weak transcription	Colon Smooth Muscle	Colon
30	chr14:25386000-25388200	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links