Variant report

Variant	rs28784661
Chromosome Location	chr4:78261029-78261030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10001554	0.81[AMR][1000 genomes]
rs10006535	0.82[AMR][1000 genomes]
rs10014177	0.80[AMR][1000 genomes]
rs10014353	0.82[AMR][1000 genomes]
rs10014372	0.82[AMR][1000 genomes]
rs10024574	0.83[AMR][1000 genomes]
rs10027556	0.82[AMR][1000 genomes]
rs11536332	0.81[AMR][1000 genomes]
rs12645407	0.82[AMR][1000 genomes]
rs12645430	0.82[AMR][1000 genomes]
rs1541661	0.82[AMR][1000 genomes]
rs1541662	0.82[AMR][1000 genomes]
rs17402068	0.81[AMR][1000 genomes]
rs17410608	0.82[AMR][1000 genomes]
rs17410664	0.82[AMR][1000 genomes]
rs1862356	0.82[AMR][1000 genomes]
rs2080977	0.82[AMR][1000 genomes]
rs2080978	0.81[AMR][1000 genomes]
rs2080979	0.81[AMR][1000 genomes]
rs2080980	0.81[AMR][1000 genomes]
rs2098653	0.82[AMR][1000 genomes]
rs2098654	0.81[AMR][1000 genomes]
rs2194116	0.82[AMR][1000 genomes]
rs2194117	0.82[AMR][1000 genomes]
rs28409053	0.81[AMR][1000 genomes]
rs28563974	0.81[AMR][1000 genomes]
rs28577247	0.81[AMR][1000 genomes]
rs28665694	0.82[AMR][1000 genomes]
rs28701154	0.82[AMR][1000 genomes]
rs28713409	0.81[AMR][1000 genomes]
rs28720869	0.81[AMR][1000 genomes]
rs28733036	0.81[AMR][1000 genomes]
rs28764902	0.82[AMR][1000 genomes]
rs28765524	0.82[AMR][1000 genomes]
rs28800921	0.82[AMR][1000 genomes]
rs28804728	0.82[AMR][1000 genomes]
rs28827589	0.82[AMR][1000 genomes]
rs28832364	0.81[AMR][1000 genomes]
rs28838641	0.81[AMR][1000 genomes]
rs28851267	0.82[AMR][1000 genomes]
rs28854571	0.82[AMR][1000 genomes]
rs28860491	0.82[AMR][1000 genomes]
rs28865902	0.82[AMR][1000 genomes]
rs28873235	0.82[AMR][1000 genomes]
rs28894736	0.82[AMR][1000 genomes]
rs34386122	0.82[AMR][1000 genomes]
rs36117998	0.82[AMR][1000 genomes]
rs4321659	0.82[AMR][1000 genomes]
rs4859490	0.82[AMR][1000 genomes]
rs4859491	0.82[AMR][1000 genomes]
rs4859807	0.82[AMR][1000 genomes]
rs4859808	0.82[AMR][1000 genomes]
rs4859809	0.82[AMR][1000 genomes]
rs4859810	0.82[AMR][1000 genomes]
rs4859813	0.85[AMR][1000 genomes]
rs4859814	0.82[AMR][1000 genomes]
rs4859815	0.82[AMR][1000 genomes]
rs4859818	0.81[AMR][1000 genomes]
rs56115488	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56199515	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs59680999	0.81[AMR][1000 genomes]
rs6816489	0.84[AMR][1000 genomes]
rs6846070	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72856841	0.81[AMR][1000 genomes]
rs72856846	0.81[AMR][1000 genomes]
rs72856847	0.81[AMR][1000 genomes]
rs72856863	0.82[AMR][1000 genomes]
rs933657	0.82[AMR][1000 genomes]
rs9991175	0.83[AMR][1000 genomes]
rs9992404	0.82[AMR][1000 genomes]
rs9994215	0.81[AMR][1000 genomes]
rs9996094	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006017	chr4:78139780-78312974	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003383	chr4:78170317-78265687	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1002683	chr4:78170317-78281331	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1010450	chr4:78182037-78317840	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1004824	chr4:78188691-78312974	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1000447	chr4:78191608-78291173	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3468255	chr4:78237484-78277631	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv5935	chr4:78237568-78277734	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv3468256	chr4:78237627-78277552	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv1845782	chr4:78237955-78321598	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78259000-78263000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:78259200-78263000	Weak transcription	NHEK	skin

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