Variant report

Variant	rs6846070
Chromosome Location	chr4:78260633-78260634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 262 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:251)

rs_ID	r²[population]
rs10000129	0.80[AFR][1000 genomes]
rs10000161	0.80[AFR][1000 genomes]
rs10001554	0.83[AFR][1000 genomes]
rs10002514	0.80[AFR][1000 genomes]
rs10002520	0.80[AFR][1000 genomes]
rs10002804	0.80[AFR][1000 genomes]
rs10003257	0.80[AFR][1000 genomes]
rs10003385	0.80[AFR][1000 genomes]
rs10003395	0.82[AFR][1000 genomes]
rs10003480	0.80[AFR][1000 genomes]
rs10006535	0.83[AFR][1000 genomes]
rs10006656	0.80[AFR][1000 genomes]
rs10007003	0.82[AFR][1000 genomes]
rs10007844	0.82[AFR][1000 genomes]
rs10007856	0.81[AFR][1000 genomes]
rs10009287	0.81[AFR][1000 genomes]
rs10010146	0.80[AFR][1000 genomes]
rs10010526	0.80[AFR][1000 genomes]
rs10011281	0.80[AFR][1000 genomes]
rs10011734	0.80[ASN][1000 genomes]
rs10012774	0.80[AFR][1000 genomes]
rs10012879	0.80[AFR][1000 genomes]
rs10013307	0.80[AFR][1000 genomes]
rs10014353	0.83[AFR][1000 genomes]
rs10014372	0.83[AFR][1000 genomes]
rs10014990	0.83[AFR][1000 genomes]
rs10015460	0.82[AFR][1000 genomes]
rs10016564	0.80[AFR][1000 genomes]
rs10016991	0.80[AFR][1000 genomes]
rs10017089	0.80[AFR][1000 genomes]
rs10017165	0.80[AFR][1000 genomes]
rs10017537	0.82[AFR][1000 genomes]
rs10017551	0.82[AFR][1000 genomes]
rs10017552	0.82[AFR][1000 genomes]
rs10017634	0.82[AFR][1000 genomes]
rs10018749	0.80[AFR][1000 genomes]
rs10018841	0.80[AFR][1000 genomes]
rs10022709	0.82[AFR][1000 genomes]
rs10023087	0.80[AFR][1000 genomes]
rs10023257	0.80[AFR][1000 genomes]
rs10023503	0.80[AFR][1000 genomes]
rs10023801	0.82[AFR][1000 genomes]
rs10024574	0.83[AFR][1000 genomes]
rs10025487	0.80[AFR][1000 genomes]
rs10025674	0.80[AFR][1000 genomes]
rs10026063	0.80[AFR][1000 genomes]
rs10026632	0.80[AFR][1000 genomes]
rs10027556	0.81[AMR][1000 genomes]
rs10029187	0.80[AFR][1000 genomes]
rs10031446	0.82[AFR][1000 genomes]
rs10033434	0.80[AFR][1000 genomes]
rs10033519	0.80[AFR][1000 genomes]
rs10034292	0.80[AFR][1000 genomes]
rs10470969	0.80[AFR][1000 genomes]
rs10470970	0.80[AFR][1000 genomes]
rs10470971	0.80[AFR][1000 genomes]
rs10518173	0.80[AFR][1000 genomes]
rs11536332	0.83[AFR][1000 genomes]
rs1160044	0.80[AFR][1000 genomes]
rs1160276	0.80[AFR][1000 genomes]
rs12641807	0.80[AFR][1000 genomes]
rs12642435	0.80[AFR][1000 genomes]
rs12642499	0.80[AFR][1000 genomes]
rs12643064	0.80[AFR][1000 genomes]
rs12643399	0.80[AFR][1000 genomes]
rs12645161	0.80[AFR][1000 genomes]
rs12645407	0.82[AFR][1000 genomes]
rs12645430	0.82[AFR][1000 genomes]
rs12645827	0.80[AFR][1000 genomes]
rs12647087	0.80[AFR][1000 genomes]
rs12650208	0.81[AFR][1000 genomes]
rs12650240	0.80[AFR][1000 genomes]
rs12650269	0.80[AFR][1000 genomes]
rs12650901	0.80[AFR][1000 genomes]
rs12651380	0.80[AFR][1000 genomes]
rs13434612	0.80[AFR][1000 genomes]
rs13434625	0.80[AFR][1000 genomes]
rs13434629	0.80[AFR][1000 genomes]
rs13435669	0.80[AFR][1000 genomes]
rs1541661	0.81[AMR][1000 genomes]
rs1541662	0.81[AMR][1000 genomes]
rs17396195	0.80[AFR][1000 genomes]
rs17396202	0.80[AFR][1000 genomes]
rs17396596	0.80[AFR][1000 genomes]
rs17396701	0.80[AFR][1000 genomes]
rs17396819	0.80[AFR][1000 genomes]
rs17397057	0.80[AFR][1000 genomes]
rs17397078	0.80[AFR][1000 genomes]
rs17397262	0.80[AFR][1000 genomes]
rs17397429	0.80[AFR][1000 genomes]
rs17400808	0.80[AFR][1000 genomes]
rs17400975	0.80[AFR][1000 genomes]
rs17401023	0.80[AFR][1000 genomes]
rs17401183	0.80[AFR][1000 genomes]
rs17401343	0.82[AFR][1000 genomes]
rs17401378	0.80[AFR][1000 genomes]
rs17401553	0.80[AFR][1000 genomes]
rs17402068	0.81[AFR][1000 genomes]
rs17410608	0.82[AFR][1000 genomes]
rs17410664	0.81[AMR][1000 genomes]
rs1862356	0.82[AFR][1000 genomes]
rs1988614	0.80[AFR][1000 genomes]
rs2007495	0.80[AFR][1000 genomes]
rs2007496	0.80[AFR][1000 genomes]
rs2098653	0.82[AFR][1000 genomes]
rs2098654	0.81[AFR][1000 genomes]
rs2112631	0.80[AFR][1000 genomes]
rs2194116	0.82[AFR][1000 genomes]
rs2194117	0.82[AFR][1000 genomes]
rs2194129	0.80[AFR][1000 genomes]
rs28371056	0.80[AFR][1000 genomes]
rs28376004	0.80[AFR][1000 genomes]
rs28409053	0.81[AFR][1000 genomes]
rs28446916	0.80[AFR][1000 genomes]
rs28505629	0.80[AFR][1000 genomes]
rs28507973	0.80[AFR][1000 genomes]
rs28526611	0.80[AFR][1000 genomes]
rs28528846	0.80[AFR][1000 genomes]
rs28529275	0.80[AFR][1000 genomes]
rs28563974	0.81[AFR][1000 genomes]
rs28566794	0.80[AFR][1000 genomes]
rs28577247	0.81[AFR][1000 genomes]
rs28589297	0.80[AFR][1000 genomes]
rs28650115	0.80[AFR][1000 genomes]
rs28653483	0.80[AFR][1000 genomes]
rs28657009	0.80[AFR][1000 genomes]
rs2866042	0.80[AFR][1000 genomes]
rs2866043	0.80[AFR][1000 genomes]
rs2866044	0.80[AFR][1000 genomes]
rs2866045	0.80[AFR][1000 genomes]
rs2866047	0.80[AFR][1000 genomes]
rs2866048	0.81[AFR][1000 genomes]
rs2866049	0.80[AFR][1000 genomes]
rs28665694	0.82[AFR][1000 genomes]
rs28669874	0.80[AFR][1000 genomes]
rs28696354	0.82[AFR][1000 genomes]
rs28701154	0.82[AFR][1000 genomes]
rs28713409	0.81[AFR][1000 genomes]
rs28720869	0.81[AFR][1000 genomes]
rs28733036	0.81[AFR][1000 genomes]
rs28740917	0.81[AFR][1000 genomes]
rs28764902	0.82[AFR][1000 genomes]
rs28765524	0.81[AFR][1000 genomes]
rs28784661	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28800921	0.83[AFR][1000 genomes]
rs28804728	0.83[AFR][1000 genomes]
rs28816218	0.84[AFR][1000 genomes]
rs28827589	0.83[AFR][1000 genomes]
rs28838641	0.82[AFR][1000 genomes]
rs28851267	0.83[AFR][1000 genomes]
rs28854571	0.83[AFR][1000 genomes]
rs28860491	0.82[AFR][1000 genomes]
rs28864437	0.80[AFR][1000 genomes]
rs28865902	0.84[AFR][1000 genomes]
rs28873235	0.83[AFR][1000 genomes]
rs28882134	0.81[AFR][1000 genomes]
rs28882408	0.84[AFR][1000 genomes]
rs28884597	0.80[AFR][1000 genomes]
rs28894736	0.82[AFR][1000 genomes]
rs34386122	0.83[AFR][1000 genomes]
rs34803449	0.80[AFR][1000 genomes]
rs36117998	0.83[AFR][1000 genomes]
rs4321659	0.82[AFR][1000 genomes]
rs4441779	0.80[AFR][1000 genomes]
rs4608831	0.80[AFR][1000 genomes]
rs4616777	0.80[AFR][1000 genomes]
rs4859481	0.80[AFR][1000 genomes]
rs4859482	0.80[AFR][1000 genomes]
rs4859483	0.80[AFR][1000 genomes]
rs4859486	0.80[AFR][1000 genomes]
rs4859488	0.80[AFR][1000 genomes]
rs4859490	0.82[AFR][1000 genomes]
rs4859491	0.82[AFR][1000 genomes]
rs4859773	0.80[AFR][1000 genomes]
rs4859774	0.80[AFR][1000 genomes]
rs4859775	0.80[AFR][1000 genomes]
rs4859776	0.80[AFR][1000 genomes]
rs4859779	0.80[AFR][1000 genomes]
rs4859784	0.80[AFR][1000 genomes]
rs4859786	0.80[AFR][1000 genomes]
rs4859787	0.80[AFR][1000 genomes]
rs4859793	0.80[AFR][1000 genomes]
rs4859794	0.80[AFR][1000 genomes]
rs4859795	0.80[AFR][1000 genomes]
rs4859796	0.80[AFR][1000 genomes]
rs4859797	0.80[AFR][1000 genomes]
rs4859798	0.80[AFR][1000 genomes]
rs4859799	0.80[AFR][1000 genomes]
rs4859800	0.80[AFR][1000 genomes]
rs4859802	0.80[AFR][1000 genomes]
rs4859803	0.80[AFR][1000 genomes]
rs4859804	0.80[AFR][1000 genomes]
rs4859805	0.80[AFR][1000 genomes]
rs4859807	0.82[AFR][1000 genomes]
rs4859808	0.82[AFR][1000 genomes]
rs4859809	0.82[AFR][1000 genomes]
rs4859810	0.82[AFR][1000 genomes]
rs4859813	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4859815	0.82[AFR][1000 genomes]
rs4859818	0.82[AFR][1000 genomes]
rs56115488	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56186979	0.82[AFR][1000 genomes]
rs56199515	0.82[AMR][1000 genomes]
rs56694835	0.80[AFR][1000 genomes]
rs56860489	0.80[AFR][1000 genomes]
rs58165890	0.80[AFR][1000 genomes]
rs60307733	0.81[AFR][1000 genomes]
rs61329326	0.80[AFR][1000 genomes]
rs6815901	0.80[AFR][1000 genomes]
rs6816489	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6817367	0.82[AFR][1000 genomes]
rs6818016	0.84[AFR][1000 genomes]
rs6836179	0.80[AFR][1000 genomes]
rs6843119	0.82[AFR][1000 genomes]
rs723972	0.80[AFR][1000 genomes]
rs72856841	0.82[AFR][1000 genomes]
rs72856846	0.82[AFR][1000 genomes]
rs72856847	0.82[AFR][1000 genomes]
rs72856863	0.83[AFR][1000 genomes]
rs72869734	0.80[AFR][1000 genomes]
rs72869739	0.80[AFR][1000 genomes]
rs72869741	0.80[AFR][1000 genomes]
rs72869742	0.80[AFR][1000 genomes]
rs72869744	0.80[AFR][1000 genomes]
rs72869745	0.80[AFR][1000 genomes]
rs72869746	0.81[AFR][1000 genomes]
rs7377173	0.80[AFR][1000 genomes]
rs73827303	0.80[AFR][1000 genomes]
rs73829714	0.81[AFR][1000 genomes]
rs7435398	0.80[AFR][1000 genomes]
rs752062	0.80[AFR][1000 genomes]
rs752063	0.80[AFR][1000 genomes]
rs752064	0.81[AFR][1000 genomes]
rs888982	0.80[AFR][1000 genomes]
rs888983	0.80[AFR][1000 genomes]
rs933657	0.82[AFR][1000 genomes]
rs960507	0.80[AFR][1000 genomes]
rs960508	0.80[AFR][1000 genomes]
rs9761683	0.81[AFR][1000 genomes]
rs9884375	0.80[AFR][1000 genomes]
rs9884380	0.80[AFR][1000 genomes]
rs9991175	0.83[AFR][1000 genomes]
rs9991635	0.80[AFR][1000 genomes]
rs9991953	0.80[AFR][1000 genomes]
rs9992191	0.80[AFR][1000 genomes]
rs9992404	0.83[AFR][1000 genomes]
rs9994215	0.81[AFR][1000 genomes]
rs9994807	0.80[AFR][1000 genomes]
rs9996094	0.81[AFR][1000 genomes]
rs9997722	0.80[AFR][1000 genomes]
rs9997735	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006017	chr4:78139780-78312974	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003383	chr4:78170317-78265687	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1002683	chr4:78170317-78281331	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1010450	chr4:78182037-78317840	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1004824	chr4:78188691-78312974	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1000447	chr4:78191608-78291173	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3468255	chr4:78237484-78277631	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv5935	chr4:78237568-78277734	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv3468256	chr4:78237627-78277552	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv1845782	chr4:78237955-78321598	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78259000-78263000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:78259200-78263000	Weak transcription	NHEK	skin

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