Variant report

Variant	rs28786172
Chromosome Location	chr14:103837091-103837092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000272533	Chromatin interaction
ENSG00000100664	Chromatin interaction
ENSG00000075413	Chromatin interaction
ENSG00000259428	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs28634103	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6575980	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7144155	1.00[AMR][1000 genomes]
rs7157565	1.00[AMR][1000 genomes]
rs7158630	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73359941	1.00[AMR][1000 genomes]
rs73359942	1.00[AMR][1000 genomes]
rs73359945	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73359960	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73359967	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73359968	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042714	chr14:103085298-103860730	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	nsv1049747	chr14:103126148-103955984	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
3	nsv534254	chr14:103470073-104023906	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
4	nsv9168	chr14:103531729-103913306	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:103828400-103838600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr14:103831200-103838200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr14:103834600-103837600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr14:103834600-103838600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr14:103834800-103838400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:103835000-103837600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:103835000-103838400	Weak transcription	NHLF	lung
8	chr14:103835200-103838200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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